Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCNAP12004 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCNAP12004 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCNAP12004 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCNAP12004 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCNAP12004 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCNAP12004 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.3■□□□□ 0.84
PCNAP12004 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCNAP12004 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCNAP12004 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCNAP12004 TPRG1LP1-201ENST00000598702 760 ntBASIC20.3■□□□□ 0.84
PCNAP12004 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.3■□□□□ 0.84
PCNAP12004 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCNAP12004 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCNAP12004 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
PCNAP12004 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
PCNAP12004 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
PCNAP12004 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.29■□□□□ 0.84
PCNAP12004 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
PCNAP12004 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
PCNAP12004 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCNAP12004 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PCNAP12004 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCNAP12004 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.29■□□□□ 0.84
PCNAP12004 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.29■□□□□ 0.84
PCNAP12004 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
PCNAP12004 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCNAP12004 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCNAP12004 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.28■□□□□ 0.84
PCNAP12004 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
PCNAP12004 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
PCNAP12004 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PCNAP12004 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
PCNAP12004 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCNAP12004 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.28■□□□□ 0.84
PCNAP12004 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PCNAP12004 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.28■□□□□ 0.84
PCNAP12004 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.28■□□□□ 0.84
PCNAP12004 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCNAP12004 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
PCNAP12004 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PCNAP12004 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCNAP12004 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCNAP12004 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCNAP12004 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.27■□□□□ 0.84
PCNAP12004 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCNAP12004 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCNAP12004 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PCNAP12004 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PCNAP12004 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.27■□□□□ 0.84
PCNAP12004 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.27■□□□□ 0.84
PCNAP12004 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PCNAP12004 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PCNAP12004 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
PCNAP12004 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
PCNAP12004 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.27■□□□□ 0.83
PCNAP12004 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
PCNAP12004 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
PCNAP12004 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
PCNAP12004 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
PCNAP12004 AL157384.1-201ENST00000445995 2473 ntBASIC20.26■□□□□ 0.83
PCNAP12004 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.26■□□□□ 0.83
PCNAP12004 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCNAP12004 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
PCNAP12004 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.26■□□□□ 0.83
PCNAP12004 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
PCNAP12004 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCNAP12004 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCNAP12004 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCNAP12004 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCNAP12004 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCNAP12004 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PCNAP12004 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.26■□□□□ 0.83
PCNAP12004 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.26■□□□□ 0.83
PCNAP12004 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCNAP12004 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCNAP12004 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCNAP12004 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.25■□□□□ 0.83
PCNAP12004 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PCNAP12004 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCNAP12004 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCNAP12004 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.25■□□□□ 0.83
PCNAP12004 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.25■□□□□ 0.83
PCNAP12004 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCNAP12004 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PCNAP12004 AC027612.3-201ENST00000413684 1047 ntBASIC20.25■□□□□ 0.83
PCNAP12004 ZNRF2P3-201ENST00000424200 374 ntBASIC20.25■□□□□ 0.83
PCNAP12004 AC079140.4-201ENST00000507448 529 ntBASIC20.25■□□□□ 0.83
PCNAP12004 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCNAP12004 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCNAP12004 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.25■□□□□ 0.83
PCNAP12004 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCNAP12004 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCNAP12004 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCNAP12004 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCNAP12004 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCNAP12004 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.25■□□□□ 0.83
PCNAP12004 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCNAP12004 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PCNAP12004 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms