Protein–RNA interactions for Protein: P07339

CTSD, Cathepsin D, humanhuman

Predicted RBP Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTSDP07339 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CTSDP07339 AL391422.3-201ENST00000603791 2761 ntBASIC17.34■□□□□ 0.37
CTSDP07339 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.33■□□□□ 0.37
CTSDP07339 AC007225.1-201ENST00000566331 1836 ntBASIC17.33■□□□□ 0.37
CTSDP07339 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CTSDP07339 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CTSDP07339 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC17.33■□□□□ 0.37
CTSDP07339 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CTSDP07339 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CTSDP07339 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC17.33■□□□□ 0.36
CTSDP07339 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CTSDP07339 AFG3L1P-217ENST00000557444 2447 ntBASIC17.33■□□□□ 0.36
CTSDP07339 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
CTSDP07339 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CTSDP07339 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CTSDP07339 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.33■□□□□ 0.36
CTSDP07339 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.33■□□□□ 0.36
CTSDP07339 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CTSDP07339 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC17.32■□□□□ 0.36
CTSDP07339 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.32■□□□□ 0.36
CTSDP07339 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTSDP07339 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
CTSDP07339 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTSDP07339 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CTSDP07339 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTSDP07339 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC17.32■□□□□ 0.36
CTSDP07339 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CTSDP07339 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC17.32■□□□□ 0.36
CTSDP07339 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.32■□□□□ 0.36
CTSDP07339 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CTSDP07339 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CTSDP07339 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CTSDP07339 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC17.32■□□□□ 0.36
CTSDP07339 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CTSDP07339 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC17.32■□□□□ 0.36
CTSDP07339 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC17.32■□□□□ 0.36
CTSDP07339 AC010525.1-201ENST00000585559 441 ntBASIC17.32■□□□□ 0.36
CTSDP07339 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTSDP07339 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTSDP07339 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.32■□□□□ 0.36
CTSDP07339 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTSDP07339 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CTSDP07339 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CTSDP07339 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTSDP07339 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CTSDP07339 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CTSDP07339 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTSDP07339 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTSDP07339 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC17.31■□□□□ 0.36
CTSDP07339 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
CTSDP07339 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTSDP07339 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTSDP07339 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTSDP07339 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC17.31■□□□□ 0.36
CTSDP07339 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC17.31■□□□□ 0.36
CTSDP07339 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.31■□□□□ 0.36
CTSDP07339 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC17.31■□□□□ 0.36
CTSDP07339 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTSDP07339 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTSDP07339 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.31■□□□□ 0.36
CTSDP07339 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTSDP07339 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CTSDP07339 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTSDP07339 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CTSDP07339 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTSDP07339 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTSDP07339 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.31■□□□□ 0.36
CTSDP07339 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTSDP07339 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC17.31■□□□□ 0.36
CTSDP07339 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTSDP07339 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CTSDP07339 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTSDP07339 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
CTSDP07339 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CTSDP07339 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.3■□□□□ 0.36
CTSDP07339 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC17.3■□□□□ 0.36
CTSDP07339 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTSDP07339 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTSDP07339 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTSDP07339 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTSDP07339 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
CTSDP07339 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC17.3■□□□□ 0.36
CTSDP07339 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CTSDP07339 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.3■□□□□ 0.36
CTSDP07339 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTSDP07339 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CTSDP07339 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC17.3■□□□□ 0.36
CTSDP07339 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTSDP07339 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.3■□□□□ 0.36
CTSDP07339 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CTSDP07339 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTSDP07339 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTSDP07339 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CTSDP07339 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.29■□□□□ 0.36
CTSDP07339 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CTSDP07339 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTSDP07339 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CTSDP07339 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTSDP07339 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTSDP07339 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms