Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
VPS4BO75351 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS4BO75351 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS4BO75351 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
VPS4BO75351 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS4BO75351 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS4BO75351 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.43■□□□□ 0.86
VPS4BO75351 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.43■□□□□ 0.86
VPS4BO75351 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.43■□□□□ 0.86
VPS4BO75351 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.43■□□□□ 0.86
VPS4BO75351 AL354811.1-201ENST00000610286 706 ntBASIC20.43■□□□□ 0.86
VPS4BO75351 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
VPS4BO75351 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.43■□□□□ 0.86
VPS4BO75351 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
VPS4BO75351 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS4BO75351 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4BO75351 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4BO75351 AC073130.3-201ENST00000624389 2278 ntBASIC20.42■□□□□ 0.86
VPS4BO75351 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
VPS4BO75351 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4BO75351 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4BO75351 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.42■□□□□ 0.86
VPS4BO75351 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.42■□□□□ 0.86
VPS4BO75351 CCDC92B-201ENST00000575506 885 ntBASIC20.42■□□□□ 0.86
VPS4BO75351 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.42■□□□□ 0.86
VPS4BO75351 MIR6084-201ENST00000622012 110 ntBASIC20.42■□□□□ 0.86
VPS4BO75351 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4BO75351 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4BO75351 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4BO75351 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4BO75351 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.42■□□□□ 0.86
VPS4BO75351 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS4BO75351 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
VPS4BO75351 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4BO75351 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS4BO75351 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4BO75351 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4BO75351 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4BO75351 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.41■□□□□ 0.86
VPS4BO75351 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.41■□□□□ 0.86
VPS4BO75351 AC012414.1-201ENST00000556676 535 ntBASIC20.41■□□□□ 0.86
VPS4BO75351 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.41■□□□□ 0.86
VPS4BO75351 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
VPS4BO75351 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4BO75351 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS4BO75351 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.41■□□□□ 0.86
VPS4BO75351 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
VPS4BO75351 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4BO75351 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4BO75351 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
VPS4BO75351 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
VPS4BO75351 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4BO75351 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4BO75351 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4BO75351 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4BO75351 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
VPS4BO75351 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4BO75351 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4BO75351 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4BO75351 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4BO75351 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.4■□□□□ 0.86
VPS4BO75351 MIR572-201ENST00000384983 95 ntBASIC20.4■□□□□ 0.86
VPS4BO75351 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS4BO75351 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4BO75351 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4BO75351 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.4■□□□□ 0.86
VPS4BO75351 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.4■□□□□ 0.86
VPS4BO75351 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4BO75351 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
VPS4BO75351 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
VPS4BO75351 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VPS4BO75351 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4BO75351 AP006587.3-201ENST00000525742 1516 ntBASIC20.39■□□□□ 0.85
VPS4BO75351 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
VPS4BO75351 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4BO75351 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS4BO75351 IGHV3-19-201ENST00000521488 291 ntBASIC20.39■□□□□ 0.85
VPS4BO75351 KRT18P14-201ENST00000534205 1250 ntBASIC20.39■□□□□ 0.85
VPS4BO75351 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4BO75351 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4BO75351 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
VPS4BO75351 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4BO75351 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS4BO75351 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms