Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC23.6■■□□□ 1.37
MSH4O15457 PARP1-210ENST00000629232 477 ntTSL 5 BASIC23.6■■□□□ 1.37
MSH4O15457 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
MSH4O15457 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC23.59■■□□□ 1.37
MSH4O15457 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
MSH4O15457 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
MSH4O15457 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
MSH4O15457 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
MSH4O15457 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC23.59■■□□□ 1.37
MSH4O15457 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
MSH4O15457 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC23.59■■□□□ 1.37
MSH4O15457 AC243732.1-201ENST00000612648 864 ntBASIC23.59■■□□□ 1.37
MSH4O15457 AC013268.1-206ENST00000638368 961 ntBASIC23.59■■□□□ 1.37
MSH4O15457 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC23.59■■□□□ 1.37
MSH4O15457 AC112229.1-201ENST00000639295 961 ntBASIC23.59■■□□□ 1.37
MSH4O15457 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
MSH4O15457 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC23.59■■□□□ 1.37
MSH4O15457 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
MSH4O15457 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
MSH4O15457 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC23.59■■□□□ 1.37
MSH4O15457 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH4O15457 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
MSH4O15457 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH4O15457 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
MSH4O15457 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
MSH4O15457 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC23.58■■□□□ 1.37
MSH4O15457 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.58■■□□□ 1.37
MSH4O15457 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC23.58■■□□□ 1.37
MSH4O15457 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC23.58■■□□□ 1.37
MSH4O15457 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC23.58■■□□□ 1.37
MSH4O15457 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC23.58■■□□□ 1.36
MSH4O15457 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC23.58■■□□□ 1.36
MSH4O15457 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.36
MSH4O15457 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH4O15457 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH4O15457 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH4O15457 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH4O15457 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH4O15457 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC23.57■■□□□ 1.36
MSH4O15457 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH4O15457 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH4O15457 AC007322.4-201ENST00000509611 723 ntBASIC23.57■■□□□ 1.36
MSH4O15457 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC23.57■■□□□ 1.36
MSH4O15457 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH4O15457 AL050303.2-201ENST00000619798 666 ntBASIC23.57■■□□□ 1.36
MSH4O15457 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
MSH4O15457 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
MSH4O15457 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH4O15457 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC23.57■■□□□ 1.36
MSH4O15457 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH4O15457 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC23.56■■□□□ 1.36
MSH4O15457 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
MSH4O15457 MIR663A-201ENST00000385250 93 ntBASIC23.56■■□□□ 1.36
MSH4O15457 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC23.56■■□□□ 1.36
MSH4O15457 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
MSH4O15457 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC23.56■■□□□ 1.36
MSH4O15457 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
MSH4O15457 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
MSH4O15457 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.56■■□□□ 1.36
MSH4O15457 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
MSH4O15457 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH4O15457 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH4O15457 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC23.55■■□□□ 1.36
MSH4O15457 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC23.55■■□□□ 1.36
MSH4O15457 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC23.55■■□□□ 1.36
MSH4O15457 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH4O15457 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH4O15457 AC245052.3-201ENST00000450182 901 ntBASIC23.55■■□□□ 1.36
MSH4O15457 PPP1R14BP3-201ENST00000509033 445 ntBASIC23.55■■□□□ 1.36
MSH4O15457 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC23.55■■□□□ 1.36
MSH4O15457 AC005181.1-201ENST00000604782 1256 ntBASIC23.55■■□□□ 1.36
MSH4O15457 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC23.55■■□□□ 1.36
MSH4O15457 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH4O15457 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.55■■□□□ 1.36
MSH4O15457 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC23.55■■□□□ 1.36
MSH4O15457 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH4O15457 AC068338.2-201ENST00000563278 1430 ntBASIC23.55■■□□□ 1.36
MSH4O15457 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH4O15457 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH4O15457 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH4O15457 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
MSH4O15457 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
MSH4O15457 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
MSH4O15457 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
MSH4O15457 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
MSH4O15457 APTR-203ENST00000430801 583 ntTSL 5 BASIC23.54■■□□□ 1.36
MSH4O15457 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC23.54■■□□□ 1.36
MSH4O15457 TK2-208ENST00000545043 1120 ntTSL 2 BASIC23.54■■□□□ 1.36
MSH4O15457 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
MSH4O15457 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.54■■□□□ 1.36
MSH4O15457 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
MSH4O15457 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC23.54■■□□□ 1.36
MSH4O15457 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
MSH4O15457 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
MSH4O15457 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
MSH4O15457 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
MSH4O15457 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
MSH4O15457 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC23.53■■□□□ 1.36
MSH4O15457 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
MSH4O15457 AC091799.1-201ENST00000422823 811 ntBASIC23.53■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms