Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHB3Q9Y5E6 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHB3Q9Y5E6 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PCDHB3Q9Y5E6 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 CDCA4P2-201ENST00000441182 718 ntBASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 Z98882.1-201ENST00000622160 2253 ntBASIC20.46■□□□□ 0.87
PCDHB3Q9Y5E6 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.45■□□□□ 0.87
PCDHB3Q9Y5E6 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.87
PCDHB3Q9Y5E6 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 KRT87P-202ENST00000534226 1464 ntBASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PCDHB3Q9Y5E6 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 OR7E47P-201ENST00000546390 1422 ntBASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PCDHB3Q9Y5E6 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 AC006970.2-201ENST00000450065 779 ntBASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.43■□□□□ 0.86
PCDHB3Q9Y5E6 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 AL034346.1-201ENST00000568244 1277 ntBASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.42■□□□□ 0.86
PCDHB3Q9Y5E6 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms