Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.84■□□□□ 0.77
ATG4BQ9Y4P1 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATG4BQ9Y4P1 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.84■□□□□ 0.77
ATG4BQ9Y4P1 AC010141.2-201ENST00000452426 721 ntBASIC19.84■□□□□ 0.77
ATG4BQ9Y4P1 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.84■□□□□ 0.77
ATG4BQ9Y4P1 NTF6G-201ENST00000591094 616 ntBASIC19.84■□□□□ 0.77
ATG4BQ9Y4P1 AP001160.3-201ENST00000601484 763 ntBASIC19.84■□□□□ 0.77
ATG4BQ9Y4P1 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ATG4BQ9Y4P1 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.84■□□□□ 0.77
ATG4BQ9Y4P1 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.84■□□□□ 0.77
ATG4BQ9Y4P1 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 AC008175.2-201ENST00000612840 297 ntBASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
ATG4BQ9Y4P1 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
ATG4BQ9Y4P1 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ATG4BQ9Y4P1 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.83■□□□□ 0.76
ATG4BQ9Y4P1 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
ATG4BQ9Y4P1 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 AC092666.2-201ENST00000613287 246 ntBASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
ATG4BQ9Y4P1 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 POU5F1P4-201ENST00000413175 1085 ntBASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ATG4BQ9Y4P1 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 KRT18P5-201ENST00000436075 1291 ntBASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 AL049796.1-201ENST00000565336 1766 ntBASIC19.8■□□□□ 0.76
ATG4BQ9Y4P1 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 KRT19P1-201ENST00000405746 1186 ntBASIC19.79■□□□□ 0.76
ATG4BQ9Y4P1 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms