Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CLN6Q9NWW5 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLN6Q9NWW5 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CLN6Q9NWW5 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.08■□□□□ 0.65
CLN6Q9NWW5 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.08■□□□□ 0.65
CLN6Q9NWW5 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLN6Q9NWW5 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CLN6Q9NWW5 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.08■□□□□ 0.64
CLN6Q9NWW5 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.08■□□□□ 0.64
CLN6Q9NWW5 pRNA.6-201ENST00000610482 90 ntBASIC19.08■□□□□ 0.64
CLN6Q9NWW5 pRNA.5-201ENST00000612139 90 ntBASIC19.08■□□□□ 0.64
CLN6Q9NWW5 pRNA.11-201ENST00000618423 90 ntBASIC19.08■□□□□ 0.64
CLN6Q9NWW5 pRNA.13-201ENST00000619112 90 ntBASIC19.08■□□□□ 0.64
CLN6Q9NWW5 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLN6Q9NWW5 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLN6Q9NWW5 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLN6Q9NWW5 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLN6Q9NWW5 AC073314.1-201ENST00000568729 2216 ntBASIC19.08■□□□□ 0.64
CLN6Q9NWW5 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.08■□□□□ 0.64
CLN6Q9NWW5 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CLN6Q9NWW5 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 AC010141.3-201ENST00000456659 717 ntBASIC19.07■□□□□ 0.64
CLN6Q9NWW5 RARRES2P1-201ENST00000474487 481 ntBASIC19.07■□□□□ 0.64
CLN6Q9NWW5 AC009299.2-201ENST00000482477 511 ntBASIC19.07■□□□□ 0.64
CLN6Q9NWW5 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CLN6Q9NWW5 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CLN6Q9NWW5 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLN6Q9NWW5 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.04■□□□□ 0.64
CLN6Q9NWW5 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.04■□□□□ 0.64
CLN6Q9NWW5 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CLN6Q9NWW5 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
CLN6Q9NWW5 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
CLN6Q9NWW5 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
CLN6Q9NWW5 AC006455.2-201ENST00000429931 906 ntBASIC19.04■□□□□ 0.64
CLN6Q9NWW5 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.04■□□□□ 0.64
CLN6Q9NWW5 UNC93B8-201ENST00000511903 705 ntBASIC19.04■□□□□ 0.64
CLN6Q9NWW5 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.04■□□□□ 0.64
CLN6Q9NWW5 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.04■□□□□ 0.64
CLN6Q9NWW5 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.04■□□□□ 0.64
CLN6Q9NWW5 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLN6Q9NWW5 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms