Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 AL136116.3-201ENST00000402907 1138 ntBASIC19.05■□□□□ 0.64
DDX28Q9NUL7 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 MIR4466-201ENST00000606121 54 ntBASIC19.05■□□□□ 0.64
DDX28Q9NUL7 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.05■□□□□ 0.64
DDX28Q9NUL7 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 AL138724.1-201ENST00000606771 1088 ntBASIC19.04■□□□□ 0.64
DDX28Q9NUL7 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
DDX28Q9NUL7 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 AC131281.2-201ENST00000520478 145 ntBASIC19.03■□□□□ 0.64
DDX28Q9NUL7 DUX4L19-201ENST00000557448 1267 ntBASIC19.03■□□□□ 0.64
DDX28Q9NUL7 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 AC068587.7-201ENST00000641602 218 ntBASIC19.03■□□□□ 0.64
DDX28Q9NUL7 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.03■□□□□ 0.64
DDX28Q9NUL7 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.02■□□□□ 0.64
DDX28Q9NUL7 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
DDX28Q9NUL7 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.63
DDX28Q9NUL7 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
DDX28Q9NUL7 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
DDX28Q9NUL7 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
DDX28Q9NUL7 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.01■□□□□ 0.63
DDX28Q9NUL7 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
DDX28Q9NUL7 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.01■□□□□ 0.63
DDX28Q9NUL7 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
DDX28Q9NUL7 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
DDX28Q9NUL7 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.01■□□□□ 0.63
DDX28Q9NUL7 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
DDX28Q9NUL7 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
DDX28Q9NUL7 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.01■□□□□ 0.63
DDX28Q9NUL7 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.01■□□□□ 0.63
DDX28Q9NUL7 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
DDX28Q9NUL7 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.01■□□□□ 0.63
DDX28Q9NUL7 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
DDX28Q9NUL7 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms