Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDH9Q9HC56 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDH9Q9HC56 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDH9Q9HC56 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PCDH9Q9HC56 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PCDH9Q9HC56 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.64■■□□□ 1.05
PCDH9Q9HC56 AC009237.3-201ENST00000393279 1427 ntBASIC21.63■■□□□ 1.05
PCDH9Q9HC56 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 AC073130.3-201ENST00000624389 2278 ntBASIC21.63■■□□□ 1.05
PCDH9Q9HC56 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
PCDH9Q9HC56 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
PCDH9Q9HC56 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 TPRG1LP1-201ENST00000598702 760 ntBASIC21.61■■□□□ 1.05
PCDH9Q9HC56 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDH9Q9HC56 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDH9Q9HC56 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDH9Q9HC56 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PCDH9Q9HC56 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.6■■□□□ 1.05
PCDH9Q9HC56 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PCDH9Q9HC56 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDH9Q9HC56 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDH9Q9HC56 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDH9Q9HC56 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDH9Q9HC56 AC005224.4-201ENST00000583262 1652 ntBASIC21.6■■□□□ 1.05
PCDH9Q9HC56 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.59■■□□□ 1.05
PCDH9Q9HC56 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.59■■□□□ 1.05
PCDH9Q9HC56 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDH9Q9HC56 SLC25A24-204ENST00000569674 2357 ntBASIC21.59■■□□□ 1.05
PCDH9Q9HC56 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDH9Q9HC56 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PCDH9Q9HC56 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PCDH9Q9HC56 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.59■■□□□ 1.05
PCDH9Q9HC56 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDH9Q9HC56 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDH9Q9HC56 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.59■■□□□ 1.05
PCDH9Q9HC56 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDH9Q9HC56 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDH9Q9HC56 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDH9Q9HC56 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDH9Q9HC56 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDH9Q9HC56 YBX1P1-201ENST00000445822 960 ntBASIC21.58■■□□□ 1.05
PCDH9Q9HC56 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.58■■□□□ 1.05
PCDH9Q9HC56 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.58■■□□□ 1.05
PCDH9Q9HC56 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
PCDH9Q9HC56 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PCDH9Q9HC56 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
PCDH9Q9HC56 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.58■■□□□ 1.04
PCDH9Q9HC56 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDH9Q9HC56 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
PCDH9Q9HC56 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.57■■□□□ 1.04
PCDH9Q9HC56 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PCDH9Q9HC56 AC123595.1-201ENST00000440769 1046 ntBASIC21.57■■□□□ 1.04
PCDH9Q9HC56 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms