Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
EBF3Q9H4W6 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
EBF3Q9H4W6 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.83■■□□□ 1.09
EBF3Q9H4W6 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.83■■□□□ 1.09
EBF3Q9H4W6 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.83■■□□□ 1.09
EBF3Q9H4W6 AC120498.10-201ENST00000621827 505 ntBASIC21.83■■□□□ 1.09
EBF3Q9H4W6 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.83■■□□□ 1.09
EBF3Q9H4W6 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
EBF3Q9H4W6 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
EBF3Q9H4W6 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
EBF3Q9H4W6 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 AC073210.2-201ENST00000430369 194 ntBASIC21.82■■□□□ 1.08
EBF3Q9H4W6 AC007322.4-201ENST00000509611 723 ntBASIC21.82■■□□□ 1.08
EBF3Q9H4W6 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
EBF3Q9H4W6 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 MKRN4P-201ENST00000444706 1521 ntBASIC21.81■■□□□ 1.08
EBF3Q9H4W6 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 GUSBP5-202ENST00000510805 1989 ntBASIC21.81■■□□□ 1.08
EBF3Q9H4W6 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
EBF3Q9H4W6 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 MIPEPP3-201ENST00000412105 444 ntBASIC21.8■■□□□ 1.08
EBF3Q9H4W6 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.8■■□□□ 1.08
EBF3Q9H4W6 AL137060.1-201ENST00000618151 2648 ntBASIC21.79■■□□□ 1.08
EBF3Q9H4W6 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 AC093787.1-201ENST00000450396 207 ntBASIC21.79■■□□□ 1.08
EBF3Q9H4W6 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 MIR4758-201ENST00000577688 71 ntBASIC21.79■■□□□ 1.08
EBF3Q9H4W6 AC016405.3-201ENST00000607710 860 ntBASIC21.79■■□□□ 1.08
EBF3Q9H4W6 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 AC008694.1-202ENST00000636953 945 ntBASIC21.79■■□□□ 1.08
EBF3Q9H4W6 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
EBF3Q9H4W6 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
EBF3Q9H4W6 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
EBF3Q9H4W6 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
EBF3Q9H4W6 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
EBF3Q9H4W6 POU5F1P4-201ENST00000413175 1085 ntBASIC21.78■■□□□ 1.08
EBF3Q9H4W6 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.78■■□□□ 1.08
EBF3Q9H4W6 OR10C1-204ENST00000622521 1039 ntBASIC21.78■■□□□ 1.08
EBF3Q9H4W6 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.78■■□□□ 1.08
EBF3Q9H4W6 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.78■■□□□ 1.08
EBF3Q9H4W6 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
EBF3Q9H4W6 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms