Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 MIR4758-201ENST00000577688 71 ntBASIC18.4■□□□□ 0.54
LIME1Q9H400 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIME1Q9H400 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIME1Q9H400 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIME1Q9H400 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC18.4■□□□□ 0.54
LIME1Q9H400 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIME1Q9H400 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
LIME1Q9H400 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIME1Q9H400 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.39■□□□□ 0.53
LIME1Q9H400 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIME1Q9H400 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIME1Q9H400 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
LIME1Q9H400 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIME1Q9H400 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
LIME1Q9H400 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.39■□□□□ 0.53
LIME1Q9H400 MIPEPP3-201ENST00000412105 444 ntBASIC18.39■□□□□ 0.53
LIME1Q9H400 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.39■□□□□ 0.53
LIME1Q9H400 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.39■□□□□ 0.53
LIME1Q9H400 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.39■□□□□ 0.53
LIME1Q9H400 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.39■□□□□ 0.53
LIME1Q9H400 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
LIME1Q9H400 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIME1Q9H400 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIME1Q9H400 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.39■□□□□ 0.53
LIME1Q9H400 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
LIME1Q9H400 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIME1Q9H400 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIME1Q9H400 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.38■□□□□ 0.53
LIME1Q9H400 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC18.38■□□□□ 0.53
LIME1Q9H400 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIME1Q9H400 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.38■□□□□ 0.53
LIME1Q9H400 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIME1Q9H400 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIME1Q9H400 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.38■□□□□ 0.53
LIME1Q9H400 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
LIME1Q9H400 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIME1Q9H400 AC055733.4-201ENST00000638462 1354 ntBASIC18.38■□□□□ 0.53
LIME1Q9H400 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.38■□□□□ 0.53
LIME1Q9H400 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIME1Q9H400 AC026310.3-201ENST00000625186 2373 ntBASIC18.38■□□□□ 0.53
LIME1Q9H400 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
LIME1Q9H400 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.37■□□□□ 0.53
LIME1Q9H400 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIME1Q9H400 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIME1Q9H400 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.37■□□□□ 0.53
LIME1Q9H400 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.37■□□□□ 0.53
LIME1Q9H400 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIME1Q9H400 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.37■□□□□ 0.53
LIME1Q9H400 SLC7A5P1-201ENST00000568957 537 ntBASIC18.37■□□□□ 0.53
LIME1Q9H400 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.37■□□□□ 0.53
LIME1Q9H400 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.37■□□□□ 0.53
LIME1Q9H400 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.37■□□□□ 0.53
LIME1Q9H400 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
LIME1Q9H400 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIME1Q9H400 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIME1Q9H400 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIME1Q9H400 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.37■□□□□ 0.53
LIME1Q9H400 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LIME1Q9H400 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.37■□□□□ 0.53
LIME1Q9H400 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIME1Q9H400 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIME1Q9H400 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIME1Q9H400 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIME1Q9H400 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIME1Q9H400 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.36■□□□□ 0.53
LIME1Q9H400 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIME1Q9H400 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIME1Q9H400 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.36■□□□□ 0.53
LIME1Q9H400 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.36■□□□□ 0.53
LIME1Q9H400 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIME1Q9H400 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LIME1Q9H400 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.36■□□□□ 0.53
LIME1Q9H400 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC18.36■□□□□ 0.53
LIME1Q9H400 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIME1Q9H400 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.36■□□□□ 0.53
LIME1Q9H400 AC098590.1-201ENST00000468126 897 ntBASIC18.36■□□□□ 0.53
LIME1Q9H400 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIME1Q9H400 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LIME1Q9H400 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIME1Q9H400 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.35■□□□□ 0.53
LIME1Q9H400 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIME1Q9H400 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIME1Q9H400 MKRN4P-201ENST00000444706 1521 ntBASIC18.35■□□□□ 0.53
LIME1Q9H400 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIME1Q9H400 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.35■□□□□ 0.53
LIME1Q9H400 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIME1Q9H400 AC068338.2-201ENST00000563278 1430 ntBASIC18.35■□□□□ 0.53
LIME1Q9H400 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIME1Q9H400 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIME1Q9H400 DUSP5P2-201ENST00000426873 1033 ntBASIC18.35■□□□□ 0.53
LIME1Q9H400 AC010141.2-201ENST00000452426 721 ntBASIC18.35■□□□□ 0.53
LIME1Q9H400 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIME1Q9H400 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
LIME1Q9H400 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.35■□□□□ 0.53
LIME1Q9H400 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.35■□□□□ 0.53
LIME1Q9H400 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIME1Q9H400 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.35■□□□□ 0.53
LIME1Q9H400 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIME1Q9H400 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LIME1Q9H400 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms