Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
USP44Q9H0E7 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
USP44Q9H0E7 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP44Q9H0E7 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC26.33■■□□□ 1.81
USP44Q9H0E7 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC26.33■■□□□ 1.81
USP44Q9H0E7 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
USP44Q9H0E7 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC26.33■■□□□ 1.81
USP44Q9H0E7 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP44Q9H0E7 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP44Q9H0E7 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
USP44Q9H0E7 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
USP44Q9H0E7 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC26.33■■□□□ 1.8
USP44Q9H0E7 RBM17P2-201ENST00000616397 1405 ntBASIC26.32■■□□□ 1.8
USP44Q9H0E7 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP44Q9H0E7 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP44Q9H0E7 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC26.32■■□□□ 1.8
USP44Q9H0E7 FGF8-207ENST00000618991 856 ntTSL 3 BASIC26.32■■□□□ 1.8
USP44Q9H0E7 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC26.32■■□□□ 1.8
USP44Q9H0E7 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
USP44Q9H0E7 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
USP44Q9H0E7 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
USP44Q9H0E7 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC26.31■■□□□ 1.8
USP44Q9H0E7 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC26.31■■□□□ 1.8
USP44Q9H0E7 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC26.31■■□□□ 1.8
USP44Q9H0E7 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP44Q9H0E7 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP44Q9H0E7 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP44Q9H0E7 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
USP44Q9H0E7 TERF1P5-201ENST00000477545 1207 ntBASIC26.31■■□□□ 1.8
USP44Q9H0E7 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC26.31■■□□□ 1.8
USP44Q9H0E7 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP44Q9H0E7 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
USP44Q9H0E7 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC26.31■■□□□ 1.8
USP44Q9H0E7 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC26.31■■□□□ 1.8
USP44Q9H0E7 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP44Q9H0E7 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP44Q9H0E7 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP44Q9H0E7 METTL26-203ENST00000397664 604 ntTSL 2 BASIC26.3■■□□□ 1.8
USP44Q9H0E7 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC26.3■■□□□ 1.8
USP44Q9H0E7 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
USP44Q9H0E7 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC26.3■■□□□ 1.8
USP44Q9H0E7 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP44Q9H0E7 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP44Q9H0E7 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC26.3■■□□□ 1.8
USP44Q9H0E7 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP44Q9H0E7 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
USP44Q9H0E7 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP44Q9H0E7 CROCCP5-201ENST00000436658 830 ntBASIC26.29■■□□□ 1.8
USP44Q9H0E7 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP44Q9H0E7 AC026185.1-201ENST00000445748 174 ntBASIC26.29■■□□□ 1.8
USP44Q9H0E7 MAZ-216ENST00000616501 991 ntTSL 5 BASIC26.29■■□□□ 1.8
USP44Q9H0E7 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP44Q9H0E7 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP44Q9H0E7 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP44Q9H0E7 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP44Q9H0E7 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP44Q9H0E7 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP44Q9H0E7 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC26.28■■□□□ 1.8
USP44Q9H0E7 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC26.28■■□□□ 1.8
USP44Q9H0E7 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP44Q9H0E7 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC26.28■■□□□ 1.8
USP44Q9H0E7 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
USP44Q9H0E7 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
USP44Q9H0E7 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
USP44Q9H0E7 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC26.28■■□□□ 1.8
USP44Q9H0E7 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC26.28■■□□□ 1.8
USP44Q9H0E7 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC26.28■■□□□ 1.8
USP44Q9H0E7 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC26.28■■□□□ 1.8
USP44Q9H0E7 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP44Q9H0E7 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC26.28■■□□□ 1.8
USP44Q9H0E7 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC26.28■■□□□ 1.8
USP44Q9H0E7 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP44Q9H0E7 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP44Q9H0E7 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
USP44Q9H0E7 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC26.27■■□□□ 1.8
USP44Q9H0E7 PLLP-204ENST00000569059 665 ntTSL 3 BASIC26.27■■□□□ 1.8
USP44Q9H0E7 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC26.27■■□□□ 1.8
USP44Q9H0E7 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
USP44Q9H0E7 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
USP44Q9H0E7 AC243732.1-201ENST00000612648 864 ntBASIC26.27■■□□□ 1.8
USP44Q9H0E7 MDK-213ENST00000617138 635 ntTSL 2 BASIC26.27■■□□□ 1.8
USP44Q9H0E7 PARP1-210ENST00000629232 477 ntTSL 5 BASIC26.27■■□□□ 1.8
USP44Q9H0E7 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP44Q9H0E7 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC26.27■■□□□ 1.8
USP44Q9H0E7 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
USP44Q9H0E7 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP44Q9H0E7 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP44Q9H0E7 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC26.26■■□□□ 1.79
USP44Q9H0E7 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC26.26■■□□□ 1.79
USP44Q9H0E7 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC26.26■■□□□ 1.79
USP44Q9H0E7 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC26.26■■□□□ 1.79
USP44Q9H0E7 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP44Q9H0E7 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP44Q9H0E7 PALM-207ENST00000590161 2137 ntTSL 4 BASIC26.26■■□□□ 1.79
USP44Q9H0E7 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
USP44Q9H0E7 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP44Q9H0E7 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP44Q9H0E7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
USP44Q9H0E7 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
USP44Q9H0E7 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms