Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TRIM4Q9C037 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM4Q9C037 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
TRIM4Q9C037 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM4Q9C037 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM4Q9C037 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM4Q9C037 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM4Q9C037 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM4Q9C037 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.73■□□□□ 0.91
TRIM4Q9C037 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM4Q9C037 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM4Q9C037 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.73■□□□□ 0.91
TRIM4Q9C037 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM4Q9C037 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM4Q9C037 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.73■□□□□ 0.91
TRIM4Q9C037 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TRIM4Q9C037 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM4Q9C037 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM4Q9C037 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM4Q9C037 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM4Q9C037 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM4Q9C037 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM4Q9C037 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM4Q9C037 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM4Q9C037 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM4Q9C037 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM4Q9C037 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM4Q9C037 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM4Q9C037 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM4Q9C037 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM4Q9C037 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM4Q9C037 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
TRIM4Q9C037 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
TRIM4Q9C037 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM4Q9C037 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM4Q9C037 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM4Q9C037 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
TRIM4Q9C037 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
TRIM4Q9C037 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM4Q9C037 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
TRIM4Q9C037 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
TRIM4Q9C037 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM4Q9C037 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM4Q9C037 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM4Q9C037 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
TRIM4Q9C037 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM4Q9C037 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.71■□□□□ 0.91
TRIM4Q9C037 AL355802.2-201ENST00000402069 882 ntBASIC20.71■□□□□ 0.91
TRIM4Q9C037 AC027612.3-201ENST00000413684 1047 ntBASIC20.71■□□□□ 0.91
TRIM4Q9C037 AC123595.1-201ENST00000440769 1046 ntBASIC20.71■□□□□ 0.91
TRIM4Q9C037 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM4Q9C037 AC080038.1-201ENST00000611274 1154 ntBASIC20.71■□□□□ 0.91
TRIM4Q9C037 AC009086.3-201ENST00000623486 1008 ntBASIC20.71■□□□□ 0.91
TRIM4Q9C037 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM4Q9C037 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
TRIM4Q9C037 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
TRIM4Q9C037 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
TRIM4Q9C037 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
TRIM4Q9C037 LINC01521-201ENST00000504184 1943 ntBASIC20.7■□□□□ 0.91
TRIM4Q9C037 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
TRIM4Q9C037 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
TRIM4Q9C037 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM4Q9C037 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
TRIM4Q9C037 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM4Q9C037 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
TRIM4Q9C037 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM4Q9C037 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM4Q9C037 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM4Q9C037 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM4Q9C037 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM4Q9C037 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM4Q9C037 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM4Q9C037 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM4Q9C037 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM4Q9C037 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
TRIM4Q9C037 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
TRIM4Q9C037 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM4Q9C037 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM4Q9C037 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM4Q9C037 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM4Q9C037 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
TRIM4Q9C037 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM4Q9C037 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM4Q9C037 AC004687.1-201ENST00000579003 1625 ntBASIC20.68■□□□□ 0.9
TRIM4Q9C037 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM4Q9C037 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM4Q9C037 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
TRIM4Q9C037 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM4Q9C037 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM4Q9C037 AL358852.1-201ENST00000623174 1268 ntBASIC20.68■□□□□ 0.9
TRIM4Q9C037 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
TRIM4Q9C037 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM4Q9C037 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM4Q9C037 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM4Q9C037 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM4Q9C037 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM4Q9C037 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM4Q9C037 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM4Q9C037 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM4Q9C037 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms