Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
ABCA3Q99758 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC28.33■■■□□ 2.13
ABCA3Q99758 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC28.33■■■□□ 2.13
ABCA3Q99758 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.12
ABCA3Q99758 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC28.32■■■□□ 2.12
ABCA3Q99758 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC28.32■■■□□ 2.12
ABCA3Q99758 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
ABCA3Q99758 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
ABCA3Q99758 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.12
ABCA3Q99758 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC28.32■■■□□ 2.12
ABCA3Q99758 AC233702.5-201ENST00000584107 538 ntBASIC28.32■■■□□ 2.12
ABCA3Q99758 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC28.32■■■□□ 2.12
ABCA3Q99758 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC28.32■■■□□ 2.12
ABCA3Q99758 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC28.32■■■□□ 2.12
ABCA3Q99758 AC137767.1-201ENST00000602918 1920 ntBASIC28.32■■■□□ 2.12
ABCA3Q99758 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC28.32■■■□□ 2.12
ABCA3Q99758 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC28.32■■■□□ 2.12
ABCA3Q99758 ISG20-202ENST00000379224 540 ntTSL 3 BASIC28.32■■■□□ 2.12
ABCA3Q99758 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC28.32■■■□□ 2.12
ABCA3Q99758 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC28.32■■■□□ 2.12
ABCA3Q99758 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC28.32■■■□□ 2.12
ABCA3Q99758 OR2A1-AS1-207ENST00000486094 819 ntBASIC28.32■■■□□ 2.12
ABCA3Q99758 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
ABCA3Q99758 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
ABCA3Q99758 AC105020.6-201ENST00000621523 1217 ntBASIC28.32■■■□□ 2.12
ABCA3Q99758 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC28.32■■■□□ 2.12
ABCA3Q99758 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC28.31■■■□□ 2.12
ABCA3Q99758 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC28.31■■■□□ 2.12
ABCA3Q99758 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
ABCA3Q99758 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
ABCA3Q99758 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
ABCA3Q99758 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC28.31■■■□□ 2.12
ABCA3Q99758 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
ABCA3Q99758 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
ABCA3Q99758 RN7SL471P-201ENST00000580476 299 ntBASIC28.31■■■□□ 2.12
ABCA3Q99758 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC28.31■■■□□ 2.12
ABCA3Q99758 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC28.31■■■□□ 2.12
ABCA3Q99758 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC28.31■■■□□ 2.12
ABCA3Q99758 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC28.31■■■□□ 2.12
ABCA3Q99758 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC28.3■■■□□ 2.12
ABCA3Q99758 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC28.3■■■□□ 2.12
ABCA3Q99758 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC28.3■■■□□ 2.12
ABCA3Q99758 RCN1P1-201ENST00000400413 996 ntBASIC28.3■■■□□ 2.12
ABCA3Q99758 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC28.3■■■□□ 2.12
ABCA3Q99758 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
ABCA3Q99758 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
ABCA3Q99758 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
ABCA3Q99758 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC28.3■■■□□ 2.12
ABCA3Q99758 AL589743.5-201ENST00000616611 1050 ntBASIC28.3■■■□□ 2.12
ABCA3Q99758 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC28.3■■■□□ 2.12
ABCA3Q99758 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC28.3■■■□□ 2.12
ABCA3Q99758 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC28.3■■■□□ 2.12
ABCA3Q99758 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
ABCA3Q99758 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
ABCA3Q99758 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
ABCA3Q99758 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC28.29■■■□□ 2.12
ABCA3Q99758 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC28.29■■■□□ 2.12
ABCA3Q99758 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC28.29■■■□□ 2.12
ABCA3Q99758 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC28.29■■■□□ 2.12
ABCA3Q99758 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
ABCA3Q99758 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
ABCA3Q99758 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
ABCA3Q99758 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
ABCA3Q99758 SERF2-207ENST00000409614 582 ntTSL 2 BASIC28.29■■■□□ 2.12
ABCA3Q99758 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC28.29■■■□□ 2.12
ABCA3Q99758 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
ABCA3Q99758 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC28.28■■■□□ 2.12
ABCA3Q99758 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC28.28■■■□□ 2.12
ABCA3Q99758 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC28.28■■■□□ 2.12
ABCA3Q99758 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
ABCA3Q99758 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
ABCA3Q99758 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
ABCA3Q99758 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
ABCA3Q99758 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
ABCA3Q99758 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
ABCA3Q99758 RPS2P55-201ENST00000397318 883 ntBASIC28.27■■■□□ 2.12
ABCA3Q99758 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
ABCA3Q99758 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
ABCA3Q99758 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC28.27■■■□□ 2.12
ABCA3Q99758 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
ABCA3Q99758 AC107956.1-201ENST00000494359 873 ntBASIC28.27■■■□□ 2.12
ABCA3Q99758 AC012306.2-201ENST00000609350 630 ntBASIC28.27■■■□□ 2.12
ABCA3Q99758 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.12
ABCA3Q99758 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
ABCA3Q99758 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
ABCA3Q99758 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC28.27■■■□□ 2.12
ABCA3Q99758 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.12
ABCA3Q99758 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.12
ABCA3Q99758 AC087499.1-201ENST00000418141 1075 ntBASIC28.26■■■□□ 2.12
ABCA3Q99758 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC28.26■■■□□ 2.12
ABCA3Q99758 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC28.26■■■□□ 2.12
ABCA3Q99758 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC28.26■■■□□ 2.12
ABCA3Q99758 AC124016.1-201ENST00000609552 612 ntBASIC28.26■■■□□ 2.12
ABCA3Q99758 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.12
ABCA3Q99758 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC28.26■■■□□ 2.12
ABCA3Q99758 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC28.26■■■□□ 2.12
ABCA3Q99758 AC087742.1-201ENST00000575880 1738 ntBASIC28.26■■■□□ 2.11
ABCA3Q99758 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
ABCA3Q99758 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
ABCA3Q99758 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC28.26■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms