Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLRN3Q8NCR9 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 AL049812.1-201ENST00000432563 2267 ntBASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 DUX4L11-201ENST00000611504 1267 ntBASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 DUX4L12-201ENST00000614593 1267 ntBASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 DUX4L14-201ENST00000621227 1267 ntBASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CLRN3Q8NCR9 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 CHST11-203ENST00000547956 936 ntTSL 2 BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 DUX4L13-201ENST00000554103 1267 ntBASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 DUX4L15-201ENST00000611059 1267 ntBASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 DUX4L23-201ENST00000615195 1269 ntBASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 DUX4L24-201ENST00000617576 1269 ntBASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 DUX4L22-201ENST00000618238 1269 ntBASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 DUX4L20-201ENST00000619712 1269 ntBASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 DUX4L21-201ENST00000622058 1269 ntBASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 DUX4L10-201ENST00000622460 1267 ntBASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 DUX4L25-201ENST00000624915 1269 ntBASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 CHML-204ENST00000638121 920 ntTSL 2 BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 ADK-206ENST00000541550 2222 ntTSL 2 BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.71■□□□□ 0.27
CLRN3Q8NCR9 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC16.7■□□□□ 0.26
CLRN3Q8NCR9 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN3Q8NCR9 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms