Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 UNC93B5-201ENST00000530315 699 ntBASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.8■■□□□ 1.08
NPAS3Q8IXF0 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPAS3Q8IXF0 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.79■■□□□ 1.08
NPAS3Q8IXF0 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPAS3Q8IXF0 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPAS3Q8IXF0 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NPAS3Q8IXF0 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
NPAS3Q8IXF0 AC091799.1-201ENST00000422823 811 ntBASIC21.79■■□□□ 1.08
NPAS3Q8IXF0 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.79■■□□□ 1.08
NPAS3Q8IXF0 AC026366.1-201ENST00000488803 879 ntBASIC21.79■■□□□ 1.08
NPAS3Q8IXF0 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.79■■□□□ 1.08
NPAS3Q8IXF0 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPAS3Q8IXF0 KRT17P1-201ENST00000399211 1546 ntBASIC21.79■■□□□ 1.08
NPAS3Q8IXF0 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPAS3Q8IXF0 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 AL355472.2-201ENST00000422958 438 ntBASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 AL158047.1-201ENST00000445918 881 ntBASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 AP006294.2-201ENST00000641667 209 ntBASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NPAS3Q8IXF0 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 AP003097.1-201ENST00000530657 1135 ntBASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 FAM21FP-204ENST00000608637 956 ntBASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 AC092053.2-201ENST00000640557 1818 ntBASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.77■■□□□ 1.08
NPAS3Q8IXF0 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.77■■□□□ 1.07
NPAS3Q8IXF0 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.77■■□□□ 1.07
NPAS3Q8IXF0 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPAS3Q8IXF0 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPAS3Q8IXF0 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPAS3Q8IXF0 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.76■■□□□ 1.07
NPAS3Q8IXF0 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.76■■□□□ 1.07
NPAS3Q8IXF0 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.76■■□□□ 1.07
NPAS3Q8IXF0 AC142381.4-202ENST00000563973 229 ntBASIC21.76■■□□□ 1.07
NPAS3Q8IXF0 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPAS3Q8IXF0 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPAS3Q8IXF0 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
NPAS3Q8IXF0 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
NPAS3Q8IXF0 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.75■■□□□ 1.07
NPAS3Q8IXF0 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NPAS3Q8IXF0 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.75■■□□□ 1.07
NPAS3Q8IXF0 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPAS3Q8IXF0 AC073648.6-201ENST00000641589 218 ntBASIC21.75■■□□□ 1.07
NPAS3Q8IXF0 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPAS3Q8IXF0 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPAS3Q8IXF0 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.75■■□□□ 1.07
NPAS3Q8IXF0 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPAS3Q8IXF0 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPAS3Q8IXF0 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPAS3Q8IXF0 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPAS3Q8IXF0 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.74■■□□□ 1.07
NPAS3Q8IXF0 AC245052.3-201ENST00000450182 901 ntBASIC21.74■■□□□ 1.07
NPAS3Q8IXF0 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.74■■□□□ 1.07
NPAS3Q8IXF0 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC21.74■■□□□ 1.07
NPAS3Q8IXF0 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms