Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28AQ8IWP9 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28AQ8IWP9 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28AQ8IWP9 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CCDC28AQ8IWP9 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC17.46■□□□□ 0.39
CCDC28AQ8IWP9 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28AQ8IWP9 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28AQ8IWP9 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CCDC28AQ8IWP9 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
CCDC28AQ8IWP9 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CCDC28AQ8IWP9 AL161729.1-201ENST00000604104 1402 ntBASIC17.46■□□□□ 0.39
CCDC28AQ8IWP9 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.46■□□□□ 0.38
CCDC28AQ8IWP9 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CCDC28AQ8IWP9 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 AC093536.1-201ENST00000569153 554 ntBASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 AC007029.1-201ENST00000604183 313 ntBASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 CD37-213ENST00000598095 1598 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC28AQ8IWP9 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28AQ8IWP9 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 TUB-203ENST00000534099 1759 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 GFER-205ENST00000569451 517 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 RNF126P1-201ENST00000567452 1320 ntBASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC28AQ8IWP9 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 AP005212.1-201ENST00000581547 1997 ntBASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 KRT18P10-201ENST00000388836 1287 ntBASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC28AQ8IWP9 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC28AQ8IWP9 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms