Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC24.36■■□□□ 1.49
HMGCS2P54868 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC24.36■■□□□ 1.49
HMGCS2P54868 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC24.36■■□□□ 1.49
HMGCS2P54868 C11orf96-202ENST00000528572 1834 ntBASIC24.36■■□□□ 1.49
HMGCS2P54868 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
HMGCS2P54868 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
HMGCS2P54868 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC24.36■■□□□ 1.49
HMGCS2P54868 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC24.36■■□□□ 1.49
HMGCS2P54868 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC24.36■■□□□ 1.49
HMGCS2P54868 AP006294.2-201ENST00000641667 209 ntBASIC24.36■■□□□ 1.49
HMGCS2P54868 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
HMGCS2P54868 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC24.36■■□□□ 1.49
HMGCS2P54868 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC24.35■■□□□ 1.49
HMGCS2P54868 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
HMGCS2P54868 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC24.35■■□□□ 1.49
HMGCS2P54868 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
HMGCS2P54868 AC245052.3-201ENST00000450182 901 ntBASIC24.35■■□□□ 1.49
HMGCS2P54868 AP003097.1-201ENST00000530657 1135 ntBASIC24.35■■□□□ 1.49
HMGCS2P54868 MMD2-204ENST00000612910 778 ntTSL 5 BASIC24.35■■□□□ 1.49
HMGCS2P54868 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC24.35■■□□□ 1.49
HMGCS2P54868 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
HMGCS2P54868 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC24.35■■□□□ 1.49
HMGCS2P54868 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
HMGCS2P54868 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC24.34■■□□□ 1.49
HMGCS2P54868 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
HMGCS2P54868 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
HMGCS2P54868 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
HMGCS2P54868 CYP2T3P-201ENST00000601990 817 ntBASIC24.34■■□□□ 1.49
HMGCS2P54868 AC073648.6-201ENST00000641589 218 ntBASIC24.34■■□□□ 1.49
HMGCS2P54868 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
HMGCS2P54868 AC010542.4-201ENST00000563151 1910 ntBASIC24.33■■□□□ 1.49
HMGCS2P54868 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
HMGCS2P54868 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
HMGCS2P54868 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
HMGCS2P54868 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC24.33■■□□□ 1.49
HMGCS2P54868 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC24.33■■□□□ 1.49
HMGCS2P54868 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC24.33■■□□□ 1.49
HMGCS2P54868 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC24.33■■□□□ 1.49
HMGCS2P54868 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
HMGCS2P54868 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
HMGCS2P54868 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
HMGCS2P54868 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
HMGCS2P54868 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
HMGCS2P54868 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
HMGCS2P54868 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
HMGCS2P54868 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC24.32■■□□□ 1.48
HMGCS2P54868 NME6-213ENST00000451657 871 ntTSL 2 BASIC24.32■■□□□ 1.48
HMGCS2P54868 CDV3P1-201ENST00000471403 739 ntBASIC24.32■■□□□ 1.48
HMGCS2P54868 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC24.32■■□□□ 1.48
HMGCS2P54868 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC24.32■■□□□ 1.48
HMGCS2P54868 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC24.32■■□□□ 1.48
HMGCS2P54868 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC24.32■■□□□ 1.48
HMGCS2P54868 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
HMGCS2P54868 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
HMGCS2P54868 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
HMGCS2P54868 C1orf229-201ENST00000623686 2258 ntBASIC24.32■■□□□ 1.48
HMGCS2P54868 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC24.32■■□□□ 1.48
HMGCS2P54868 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC24.32■■□□□ 1.48
HMGCS2P54868 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
HMGCS2P54868 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
HMGCS2P54868 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
HMGCS2P54868 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC24.31■■□□□ 1.48
HMGCS2P54868 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
HMGCS2P54868 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
HMGCS2P54868 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
HMGCS2P54868 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
HMGCS2P54868 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC24.31■■□□□ 1.48
HMGCS2P54868 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
HMGCS2P54868 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
HMGCS2P54868 AC100791.3-201ENST00000617619 330 ntBASIC24.31■■□□□ 1.48
HMGCS2P54868 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
HMGCS2P54868 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC24.31■■□□□ 1.48
HMGCS2P54868 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
HMGCS2P54868 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
HMGCS2P54868 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC24.3■■□□□ 1.48
HMGCS2P54868 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC24.3■■□□□ 1.48
HMGCS2P54868 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
HMGCS2P54868 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC24.3■■□□□ 1.48
HMGCS2P54868 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
HMGCS2P54868 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
HMGCS2P54868 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
HMGCS2P54868 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
HMGCS2P54868 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
HMGCS2P54868 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC24.29■■□□□ 1.48
HMGCS2P54868 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
HMGCS2P54868 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
HMGCS2P54868 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC24.29■■□□□ 1.48
HMGCS2P54868 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC24.29■■□□□ 1.48
HMGCS2P54868 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
HMGCS2P54868 ARL16-209ENST00000573715 763 ntTSL 3 BASIC24.29■■□□□ 1.48
HMGCS2P54868 ARL16-211ENST00000576135 694 ntTSL 3 BASIC24.29■■□□□ 1.48
HMGCS2P54868 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
HMGCS2P54868 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC24.29■■□□□ 1.48
HMGCS2P54868 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC24.29■■□□□ 1.48
HMGCS2P54868 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
HMGCS2P54868 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
HMGCS2P54868 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
HMGCS2P54868 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
HMGCS2P54868 BAALC-201ENST00000297574 801 ntTSL 3 BASIC24.28■■□□□ 1.48
HMGCS2P54868 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms