Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN4P29074 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.94■□□□□ 0.94
PTPN4P29074 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN4P29074 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PTPN4P29074 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
PTPN4P29074 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
PTPN4P29074 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 MIR572-201ENST00000384983 95 ntBASIC20.93■□□□□ 0.94
PTPN4P29074 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.93■□□□□ 0.94
PTPN4P29074 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
PTPN4P29074 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTPN4P29074 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.92■□□□□ 0.94
PTPN4P29074 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN4P29074 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN4P29074 AL391422.3-201ENST00000603791 2761 ntBASIC20.92■□□□□ 0.94
PTPN4P29074 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN4P29074 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
PTPN4P29074 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN4P29074 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN4P29074 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN4P29074 OR2I1P-207ENST00000453522 948 ntBASIC20.92■□□□□ 0.94
PTPN4P29074 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.92■□□□□ 0.94
PTPN4P29074 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN4P29074 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
PTPN4P29074 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN4P29074 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN4P29074 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
PTPN4P29074 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.92■□□□□ 0.94
PTPN4P29074 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN4P29074 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTPN4P29074 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.92■□□□□ 0.94
PTPN4P29074 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.92■□□□□ 0.94
PTPN4P29074 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN4P29074 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
PTPN4P29074 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN4P29074 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN4P29074 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN4P29074 AC027612.3-201ENST00000413684 1047 ntBASIC20.91■□□□□ 0.94
PTPN4P29074 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.91■□□□□ 0.94
PTPN4P29074 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PTPN4P29074 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.91■□□□□ 0.94
PTPN4P29074 AL354811.1-201ENST00000610286 706 ntBASIC20.91■□□□□ 0.94
PTPN4P29074 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.91■□□□□ 0.94
PTPN4P29074 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN4P29074 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.9■□□□□ 0.94
PTPN4P29074 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN4P29074 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.9■□□□□ 0.94
PTPN4P29074 LINC01529-204ENST00000636474 1715 ntBASIC20.9■□□□□ 0.94
PTPN4P29074 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
PTPN4P29074 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.9■□□□□ 0.94
PTPN4P29074 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
PTPN4P29074 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN4P29074 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
PTPN4P29074 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.9■□□□□ 0.94
PTPN4P29074 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
PTPN4P29074 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
PTPN4P29074 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.9■□□□□ 0.94
PTPN4P29074 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.9■□□□□ 0.94
PTPN4P29074 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.9■□□□□ 0.94
PTPN4P29074 AC010525.1-201ENST00000585559 441 ntBASIC20.9■□□□□ 0.94
PTPN4P29074 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN4P29074 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
PTPN4P29074 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN4P29074 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN4P29074 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN4P29074 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTPN4P29074 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.9■□□□□ 0.94
PTPN4P29074 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.94
PTPN4P29074 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
PTPN4P29074 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.89■□□□□ 0.94
PTPN4P29074 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PTPN4P29074 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PTPN4P29074 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.89■□□□□ 0.94
PTPN4P29074 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
PTPN4P29074 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN4P29074 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
PTPN4P29074 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN4P29074 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
PTPN4P29074 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN4P29074 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN4P29074 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.89■□□□□ 0.93
PTPN4P29074 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN4P29074 AC123595.1-201ENST00000440769 1046 ntBASIC20.89■□□□□ 0.93
PTPN4P29074 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PTPN4P29074 AC012414.1-201ENST00000556676 535 ntBASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms