Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.57■□□□□ 0.88
HOXC4P09017 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
HOXC4P09017 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.57■□□□□ 0.88
HOXC4P09017 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.57■□□□□ 0.88
HOXC4P09017 AL138781.1-201ENST00000566567 1274 ntBASIC20.57■□□□□ 0.88
HOXC4P09017 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.57■□□□□ 0.88
HOXC4P09017 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.57■□□□□ 0.88
HOXC4P09017 AC133041.1-202ENST00000642053 222 ntBASIC20.57■□□□□ 0.88
HOXC4P09017 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC4P09017 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC4P09017 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.57■□□□□ 0.88
HOXC4P09017 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC4P09017 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HOXC4P09017 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
HOXC4P09017 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
HOXC4P09017 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC4P09017 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
HOXC4P09017 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC4P09017 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.56■□□□□ 0.88
HOXC4P09017 CDV3P1-201ENST00000471403 739 ntBASIC20.56■□□□□ 0.88
HOXC4P09017 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.56■□□□□ 0.88
HOXC4P09017 MIR4758-201ENST00000577688 71 ntBASIC20.56■□□□□ 0.88
HOXC4P09017 AC016405.3-201ENST00000607710 860 ntBASIC20.56■□□□□ 0.88
HOXC4P09017 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.56■□□□□ 0.88
HOXC4P09017 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC4P09017 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC4P09017 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HOXC4P09017 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.55■□□□□ 0.88
HOXC4P09017 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC4P09017 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC4P09017 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC4P09017 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.55■□□□□ 0.88
HOXC4P09017 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.55■□□□□ 0.88
HOXC4P09017 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HOXC4P09017 MIPEPP3-201ENST00000412105 444 ntBASIC20.55■□□□□ 0.88
HOXC4P09017 AC069152.1-201ENST00000438030 544 ntBASIC20.55■□□□□ 0.88
HOXC4P09017 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.55■□□□□ 0.88
HOXC4P09017 AC093787.1-201ENST00000450396 207 ntBASIC20.55■□□□□ 0.88
HOXC4P09017 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.55■□□□□ 0.88
HOXC4P09017 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.55■□□□□ 0.88
HOXC4P09017 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.55■□□□□ 0.88
HOXC4P09017 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.55■□□□□ 0.88
HOXC4P09017 AC100791.3-201ENST00000617619 330 ntBASIC20.55■□□□□ 0.88
HOXC4P09017 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
HOXC4P09017 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.54■□□□□ 0.88
HOXC4P09017 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC4P09017 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC4P09017 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.54■□□□□ 0.88
HOXC4P09017 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC4P09017 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.54■□□□□ 0.88
HOXC4P09017 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.54■□□□□ 0.88
HOXC4P09017 AL117328.2-201ENST00000624617 1940 ntBASIC20.54■□□□□ 0.88
HOXC4P09017 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC4P09017 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC4P09017 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.54■□□□□ 0.88
HOXC4P09017 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HOXC4P09017 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC4P09017 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.53■□□□□ 0.88
HOXC4P09017 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC4P09017 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC4P09017 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
HOXC4P09017 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.53■□□□□ 0.88
HOXC4P09017 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC4P09017 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.53■□□□□ 0.88
HOXC4P09017 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC4P09017 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC4P09017 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC4P09017 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.53■□□□□ 0.88
HOXC4P09017 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
HOXC4P09017 AC092118.2-201ENST00000613495 667 ntBASIC20.53■□□□□ 0.88
HOXC4P09017 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
HOXC4P09017 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC4P09017 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
HOXC4P09017 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.53■□□□□ 0.88
HOXC4P09017 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC4P09017 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.53■□□□□ 0.88
HOXC4P09017 AC010980.2-201ENST00000587099 1412 ntBASIC20.53■□□□□ 0.88
HOXC4P09017 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXC4P09017 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
HOXC4P09017 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC4P09017 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC4P09017 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC4P09017 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC4P09017 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC4P09017 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.52■□□□□ 0.88
HOXC4P09017 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC4P09017 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC4P09017 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC4P09017 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXC4P09017 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
HOXC4P09017 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXC4P09017 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC4P09017 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
HOXC4P09017 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
HOXC4P09017 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC4P09017 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC4P09017 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXC4P09017 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HOXC4P09017 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXC4P09017 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms