Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.18■□□□□ 0.98
USP1O94782 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.18■□□□□ 0.98
USP1O94782 AL136967.2-201ENST00000623968 743 ntBASIC21.18■□□□□ 0.98
USP1O94782 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.18■□□□□ 0.98
USP1O94782 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP1O94782 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.18■□□□□ 0.98
USP1O94782 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP1O94782 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP1O94782 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
USP1O94782 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP1O94782 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.17■□□□□ 0.98
USP1O94782 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.17■□□□□ 0.98
USP1O94782 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.17■□□□□ 0.98
USP1O94782 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP1O94782 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP1O94782 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP1O94782 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP1O94782 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP1O94782 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.16■□□□□ 0.98
USP1O94782 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP1O94782 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP1O94782 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.16■□□□□ 0.98
USP1O94782 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.16■□□□□ 0.98
USP1O94782 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP1O94782 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP1O94782 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP1O94782 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP1O94782 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP1O94782 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP1O94782 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.16■□□□□ 0.98
USP1O94782 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP1O94782 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP1O94782 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
USP1O94782 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.15■□□□□ 0.98
USP1O94782 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.15■□□□□ 0.98
USP1O94782 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP1O94782 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP1O94782 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP1O94782 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP1O94782 SUDS3P1-201ENST00000505831 966 ntBASIC21.15■□□□□ 0.98
USP1O94782 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
USP1O94782 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP1O94782 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP1O94782 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP1O94782 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
USP1O94782 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.14■□□□□ 0.98
USP1O94782 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
USP1O94782 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.14■□□□□ 0.98
USP1O94782 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP1O94782 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
USP1O94782 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP1O94782 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.14■□□□□ 0.98
USP1O94782 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
USP1O94782 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP1O94782 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP1O94782 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP1O94782 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.14■□□□□ 0.97
USP1O94782 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.14■□□□□ 0.97
USP1O94782 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP1O94782 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
USP1O94782 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.14■□□□□ 0.97
USP1O94782 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
USP1O94782 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP1O94782 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP1O94782 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP1O94782 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
USP1O94782 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.13■□□□□ 0.97
USP1O94782 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.13■□□□□ 0.97
USP1O94782 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.13■□□□□ 0.97
USP1O94782 AC142381.2-201ENST00000566120 298 ntBASIC21.13■□□□□ 0.97
USP1O94782 RNF165-205ENST00000588679 2904 ntBASIC21.13■□□□□ 0.97
USP1O94782 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP1O94782 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.13■□□□□ 0.97
USP1O94782 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.13■□□□□ 0.97
USP1O94782 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
USP1O94782 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
USP1O94782 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
USP1O94782 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP1O94782 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP1O94782 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP1O94782 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.12■□□□□ 0.97
USP1O94782 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
USP1O94782 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP1O94782 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.12■□□□□ 0.97
USP1O94782 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.12■□□□□ 0.97
USP1O94782 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.12■□□□□ 0.97
USP1O94782 AC012414.1-201ENST00000556676 535 ntBASIC21.12■□□□□ 0.97
USP1O94782 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.12■□□□□ 0.97
USP1O94782 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP1O94782 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP1O94782 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP1O94782 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP1O94782 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.12■□□□□ 0.97
USP1O94782 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
USP1O94782 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.12■□□□□ 0.97
USP1O94782 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP1O94782 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.11■□□□□ 0.97
USP1O94782 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
USP1O94782 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP1O94782 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms