Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LDB3O75112 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LDB3O75112 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LDB3O75112 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.74■□□□□ 0.75
LDB3O75112 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LDB3O75112 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.74■□□□□ 0.75
LDB3O75112 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.74■□□□□ 0.75
LDB3O75112 SLC7A5P2-201ENST00000553010 536 ntBASIC19.74■□□□□ 0.75
LDB3O75112 AC137761.2-201ENST00000561729 223 ntBASIC19.74■□□□□ 0.75
LDB3O75112 AC145350.3-201ENST00000569033 163 ntBASIC19.74■□□□□ 0.75
LDB3O75112 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.74■□□□□ 0.75
LDB3O75112 AC022517.1-201ENST00000592429 346 ntBASIC19.74■□□□□ 0.75
LDB3O75112 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LDB3O75112 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LDB3O75112 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.74■□□□□ 0.75
LDB3O75112 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.74■□□□□ 0.75
LDB3O75112 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LDB3O75112 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
LDB3O75112 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
LDB3O75112 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LDB3O75112 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
LDB3O75112 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
LDB3O75112 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
LDB3O75112 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LDB3O75112 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LDB3O75112 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
LDB3O75112 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
LDB3O75112 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.73■□□□□ 0.75
LDB3O75112 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.73■□□□□ 0.75
LDB3O75112 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LDB3O75112 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LDB3O75112 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LDB3O75112 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.73■□□□□ 0.75
LDB3O75112 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LDB3O75112 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.72■□□□□ 0.75
LDB3O75112 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LDB3O75112 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.72■□□□□ 0.75
LDB3O75112 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.72■□□□□ 0.75
LDB3O75112 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LDB3O75112 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LDB3O75112 POU5F1P4-201ENST00000413175 1085 ntBASIC19.72■□□□□ 0.75
LDB3O75112 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LDB3O75112 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.72■□□□□ 0.75
LDB3O75112 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.72■□□□□ 0.75
LDB3O75112 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
LDB3O75112 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
LDB3O75112 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LDB3O75112 AL024507.2-201ENST00000606070 2574 ntBASIC19.72■□□□□ 0.75
LDB3O75112 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LDB3O75112 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.71■□□□□ 0.75
LDB3O75112 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LDB3O75112 AF106564.1-201ENST00000607058 2553 ntBASIC19.71■□□□□ 0.75
LDB3O75112 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
LDB3O75112 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LDB3O75112 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LDB3O75112 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.71■□□□□ 0.75
LDB3O75112 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LDB3O75112 UBE2DNL-204ENST00000602536 740 ntBASIC19.71■□□□□ 0.75
LDB3O75112 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LDB3O75112 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.71■□□□□ 0.75
LDB3O75112 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LDB3O75112 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LDB3O75112 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LDB3O75112 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.7■□□□□ 0.74
LDB3O75112 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LDB3O75112 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LDB3O75112 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.7■□□□□ 0.74
LDB3O75112 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LDB3O75112 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LDB3O75112 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LDB3O75112 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.7■□□□□ 0.74
LDB3O75112 AC016769.1-201ENST00000409132 1010 ntBASIC19.7■□□□□ 0.74
LDB3O75112 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.7■□□□□ 0.74
LDB3O75112 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.7■□□□□ 0.74
LDB3O75112 IKBKGP1-201ENST00000612193 1073 ntBASIC19.7■□□□□ 0.74
LDB3O75112 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LDB3O75112 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.7■□□□□ 0.74
LDB3O75112 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LDB3O75112 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LDB3O75112 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LDB3O75112 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
LDB3O75112 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LDB3O75112 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LDB3O75112 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LDB3O75112 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LDB3O75112 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LDB3O75112 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.69■□□□□ 0.74
LDB3O75112 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.69■□□□□ 0.74
LDB3O75112 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.69■□□□□ 0.74
LDB3O75112 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LDB3O75112 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LDB3O75112 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LDB3O75112 KRT18P20-201ENST00000548986 1279 ntBASIC19.69■□□□□ 0.74
LDB3O75112 AC120498.10-201ENST00000621827 505 ntBASIC19.69■□□□□ 0.74
LDB3O75112 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LDB3O75112 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
LDB3O75112 FEM1AP4-201ENST00000443167 1987 ntBASIC19.68■□□□□ 0.74
LDB3O75112 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LDB3O75112 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LDB3O75112 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms