Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1BO60663 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1BO60663 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1BO60663 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1BO60663 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LMX1BO60663 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
LMX1BO60663 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.39■□□□□ 0.53
LMX1BO60663 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1BO60663 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
LMX1BO60663 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1BO60663 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.39■□□□□ 0.53
LMX1BO60663 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
LMX1BO60663 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
LMX1BO60663 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.39■□□□□ 0.53
LMX1BO60663 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.39■□□□□ 0.53
LMX1BO60663 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1BO60663 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.39■□□□□ 0.53
LMX1BO60663 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1BO60663 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.39■□□□□ 0.53
LMX1BO60663 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.39■□□□□ 0.53
LMX1BO60663 LINC02228-203ENST00000641970 1355 ntBASIC18.39■□□□□ 0.53
LMX1BO60663 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1BO60663 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LMX1BO60663 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.38■□□□□ 0.53
LMX1BO60663 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1BO60663 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1BO60663 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
LMX1BO60663 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1BO60663 AL034346.1-201ENST00000568244 1277 ntBASIC18.38■□□□□ 0.53
LMX1BO60663 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
LMX1BO60663 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1BO60663 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.38■□□□□ 0.53
LMX1BO60663 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1BO60663 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
LMX1BO60663 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1BO60663 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1BO60663 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.38■□□□□ 0.53
LMX1BO60663 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LMX1BO60663 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
LMX1BO60663 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LMX1BO60663 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.37■□□□□ 0.53
LMX1BO60663 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.37■□□□□ 0.53
LMX1BO60663 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.37■□□□□ 0.53
LMX1BO60663 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.37■□□□□ 0.53
LMX1BO60663 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.37■□□□□ 0.53
LMX1BO60663 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.37■□□□□ 0.53
LMX1BO60663 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.37■□□□□ 0.53
LMX1BO60663 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.37■□□□□ 0.53
LMX1BO60663 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LMX1BO60663 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1BO60663 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1BO60663 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1BO60663 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.36■□□□□ 0.53
LMX1BO60663 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
LMX1BO60663 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1BO60663 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.36■□□□□ 0.53
LMX1BO60663 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1BO60663 AP006587.3-201ENST00000525742 1516 ntBASIC18.36■□□□□ 0.53
LMX1BO60663 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1BO60663 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.36■□□□□ 0.53
LMX1BO60663 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.36■□□□□ 0.53
LMX1BO60663 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1BO60663 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.36■□□□□ 0.53
LMX1BO60663 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LMX1BO60663 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
LMX1BO60663 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.35■□□□□ 0.53
LMX1BO60663 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1BO60663 AL049796.1-201ENST00000565336 1766 ntBASIC18.35■□□□□ 0.53
LMX1BO60663 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1BO60663 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.35■□□□□ 0.53
LMX1BO60663 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.35■□□□□ 0.53
LMX1BO60663 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.35■□□□□ 0.53
LMX1BO60663 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1BO60663 TERF1P2-201ENST00000583350 1212 ntBASIC18.35■□□□□ 0.53
LMX1BO60663 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LMX1BO60663 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.35■□□□□ 0.53
LMX1BO60663 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.35■□□□□ 0.53
LMX1BO60663 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LMX1BO60663 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.35■□□□□ 0.53
LMX1BO60663 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1BO60663 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1BO60663 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1BO60663 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.35■□□□□ 0.53
LMX1BO60663 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LMX1BO60663 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms