Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGB3O15347 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 ASB1-202ENST00000409297 878 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGB3O15347 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
HMGB3O15347 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGB3O15347 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
HMGB3O15347 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB3O15347 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB3O15347 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
HMGB3O15347 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGB3O15347 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB3O15347 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB3O15347 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB3O15347 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
HMGB3O15347 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
HMGB3O15347 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGB3O15347 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
HMGB3O15347 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB3O15347 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB3O15347 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB3O15347 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB3O15347 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC16.85■□□□□ 0.29
HMGB3O15347 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB3O15347 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC16.85■□□□□ 0.29
HMGB3O15347 MIR4449-201ENST00000578365 66 ntBASIC16.85■□□□□ 0.29
HMGB3O15347 AC019171.1-201ENST00000601251 1056 ntBASIC16.85■□□□□ 0.29
HMGB3O15347 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGB3O15347 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC16.85■□□□□ 0.29
HMGB3O15347 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
HMGB3O15347 AC026471.6-201ENST00000622954 1905 ntBASIC16.84■□□□□ 0.29
HMGB3O15347 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
HMGB3O15347 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGB3O15347 CA15P2-201ENST00000611168 834 ntBASIC16.84■□□□□ 0.29
HMGB3O15347 U85056.1-201ENST00000616429 682 ntBASIC16.84■□□□□ 0.29
HMGB3O15347 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGB3O15347 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 FP325331.1-202ENST00000623531 1380 ntBASIC16.84■□□□□ 0.29
HMGB3O15347 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HMGB3O15347 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGB3O15347 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGB3O15347 CROCCP1-201ENST00000426910 5675 ntBASIC16.84■□□□□ 0.29
HMGB3O15347 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC16.84■□□□□ 0.29
HMGB3O15347 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB3O15347 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
HMGB3O15347 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB3O15347 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB3O15347 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB3O15347 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB3O15347 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB3O15347 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC16.83■□□□□ 0.28
HMGB3O15347 MTX2-204ENST00000443241 799 ntTSL 3 BASIC16.83■□□□□ 0.28
HMGB3O15347 ABHD17AP3-201ENST00000503096 1137 ntBASIC16.83■□□□□ 0.28
HMGB3O15347 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
HMGB3O15347 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC16.83■□□□□ 0.28
HMGB3O15347 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB3O15347 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
HMGB3O15347 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.83■□□□□ 0.28
HMGB3O15347 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
HMGB3O15347 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB3O15347 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB3O15347 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB3O15347 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB3O15347 FEM1AP1-201ENST00000431297 1995 ntBASIC16.82■□□□□ 0.28
HMGB3O15347 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC16.82■□□□□ 0.28
HMGB3O15347 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
HMGB3O15347 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
HMGB3O15347 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HMGB3O15347 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB3O15347 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
HMGB3O15347 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HMGB3O15347 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB3O15347 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC16.82■□□□□ 0.28
HMGB3O15347 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HMGB3O15347 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms