Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC28A1O00337 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SLC28A1O00337 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.17■□□□□ 0.82
SLC28A1O00337 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.17■□□□□ 0.82
SLC28A1O00337 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SLC28A1O00337 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.17■□□□□ 0.82
SLC28A1O00337 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC28A1O00337 MIR572-201ENST00000384983 95 ntBASIC20.17■□□□□ 0.82
SLC28A1O00337 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.17■□□□□ 0.82
SLC28A1O00337 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.17■□□□□ 0.82
SLC28A1O00337 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.17■□□□□ 0.82
SLC28A1O00337 AL355001.2-201ENST00000620617 1191 ntBASIC20.17■□□□□ 0.82
SLC28A1O00337 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC28A1O00337 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC28A1O00337 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SLC28A1O00337 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SLC28A1O00337 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC28A1O00337 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC28A1O00337 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SLC28A1O00337 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
SLC28A1O00337 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SLC28A1O00337 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SLC28A1O00337 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SLC28A1O00337 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SLC28A1O00337 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
SLC28A1O00337 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.16■□□□□ 0.82
SLC28A1O00337 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SLC28A1O00337 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.16■□□□□ 0.82
SLC28A1O00337 RASA4CP-201ENST00000424092 1398 ntBASIC20.16■□□□□ 0.82
SLC28A1O00337 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SLC28A1O00337 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SLC28A1O00337 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.16■□□□□ 0.82
SLC28A1O00337 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
SLC28A1O00337 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.16■□□□□ 0.82
SLC28A1O00337 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SLC28A1O00337 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SLC28A1O00337 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.16■□□□□ 0.82
SLC28A1O00337 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
SLC28A1O00337 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC28A1O00337 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC28A1O00337 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.15■□□□□ 0.82
SLC28A1O00337 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
SLC28A1O00337 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SLC28A1O00337 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC28A1O00337 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.15■□□□□ 0.82
SLC28A1O00337 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.15■□□□□ 0.82
SLC28A1O00337 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.15■□□□□ 0.82
SLC28A1O00337 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC28A1O00337 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.15■□□□□ 0.82
SLC28A1O00337 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
SLC28A1O00337 AC006128.1-201ENST00000624704 1661 ntBASIC20.15■□□□□ 0.82
SLC28A1O00337 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC28A1O00337 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC28A1O00337 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC28A1O00337 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SLC28A1O00337 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
SLC28A1O00337 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SLC28A1O00337 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC28A1O00337 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SLC28A1O00337 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC28A1O00337 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
SLC28A1O00337 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC28A1O00337 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SLC28A1O00337 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SLC28A1O00337 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC28A1O00337 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
SLC28A1O00337 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SLC28A1O00337 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SLC28A1O00337 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC28A1O00337 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.14■□□□□ 0.81
SLC28A1O00337 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SLC28A1O00337 AL157384.1-201ENST00000445995 2473 ntBASIC20.14■□□□□ 0.81
SLC28A1O00337 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC28A1O00337 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC28A1O00337 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SLC28A1O00337 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SLC28A1O00337 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.13■□□□□ 0.81
SLC28A1O00337 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.13■□□□□ 0.81
SLC28A1O00337 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
SLC28A1O00337 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC28A1O00337 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.13■□□□□ 0.81
SLC28A1O00337 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
SLC28A1O00337 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC28A1O00337 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC28A1O00337 MIR939-201ENST00000401314 82 ntBASIC20.13■□□□□ 0.81
SLC28A1O00337 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.13■□□□□ 0.81
SLC28A1O00337 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.13■□□□□ 0.81
SLC28A1O00337 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.13■□□□□ 0.81
SLC28A1O00337 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.13■□□□□ 0.81
SLC28A1O00337 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.13■□□□□ 0.81
SLC28A1O00337 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
SLC28A1O00337 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SLC28A1O00337 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC28A1O00337 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC28A1O00337 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
SLC28A1O00337 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SLC28A1O00337 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.13■□□□□ 0.81
SLC28A1O00337 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.13■□□□□ 0.81
SLC28A1O00337 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SLC28A1O00337 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms