Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 AL135925.1-201ENST00000605920 1701 ntBASIC21.86■■□□□ 1.09
TMEM56-RWDD3S4R434 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
TMEM56-RWDD3S4R434 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TMEM56-RWDD3S4R434 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.84■■□□□ 1.09
TMEM56-RWDD3S4R434 AC142086.6-201ENST00000621154 1765 ntBASIC21.83■■□□□ 1.09
TMEM56-RWDD3S4R434 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.83■■□□□ 1.08
TMEM56-RWDD3S4R434 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TMEM56-RWDD3S4R434 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
TMEM56-RWDD3S4R434 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.82■■□□□ 1.08
TMEM56-RWDD3S4R434 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
TMEM56-RWDD3S4R434 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TMEM56-RWDD3S4R434 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TMEM56-RWDD3S4R434 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TMEM56-RWDD3S4R434 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TMEM56-RWDD3S4R434 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
TMEM56-RWDD3S4R434 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TMEM56-RWDD3S4R434 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TMEM56-RWDD3S4R434 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.79■■□□□ 1.08
TMEM56-RWDD3S4R434 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
TMEM56-RWDD3S4R434 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TMEM56-RWDD3S4R434 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
TMEM56-RWDD3S4R434 EBPL-203ENST00000378270 579 ntTSL 2 BASIC21.78■■□□□ 1.08
TMEM56-RWDD3S4R434 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC21.78■■□□□ 1.08
TMEM56-RWDD3S4R434 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TMEM56-RWDD3S4R434 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TMEM56-RWDD3S4R434 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.77■■□□□ 1.08
TMEM56-RWDD3S4R434 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
TMEM56-RWDD3S4R434 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
TMEM56-RWDD3S4R434 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TMEM56-RWDD3S4R434 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TMEM56-RWDD3S4R434 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TMEM56-RWDD3S4R434 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TMEM56-RWDD3S4R434 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TMEM56-RWDD3S4R434 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
TMEM56-RWDD3S4R434 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TMEM56-RWDD3S4R434 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TMEM56-RWDD3S4R434 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.75■■□□□ 1.07
TMEM56-RWDD3S4R434 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
TMEM56-RWDD3S4R434 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
TMEM56-RWDD3S4R434 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TMEM56-RWDD3S4R434 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TMEM56-RWDD3S4R434 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TMEM56-RWDD3S4R434 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.73■■□□□ 1.07
TMEM56-RWDD3S4R434 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TMEM56-RWDD3S4R434 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
TMEM56-RWDD3S4R434 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TMEM56-RWDD3S4R434 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TMEM56-RWDD3S4R434 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TMEM56-RWDD3S4R434 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TMEM56-RWDD3S4R434 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TMEM56-RWDD3S4R434 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
TMEM56-RWDD3S4R434 ZNRF2P1-201ENST00000441407 443 ntBASIC21.7■■□□□ 1.06
TMEM56-RWDD3S4R434 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.7■■□□□ 1.06
TMEM56-RWDD3S4R434 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TMEM56-RWDD3S4R434 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TMEM56-RWDD3S4R434 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
TMEM56-RWDD3S4R434 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TMEM56-RWDD3S4R434 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TMEM56-RWDD3S4R434 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TMEM56-RWDD3S4R434 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TMEM56-RWDD3S4R434 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TMEM56-RWDD3S4R434 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TMEM56-RWDD3S4R434 DYNLL1-208ENST00000550178 581 ntBASIC21.66■■□□□ 1.06
TMEM56-RWDD3S4R434 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TMEM56-RWDD3S4R434 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TMEM56-RWDD3S4R434 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TMEM56-RWDD3S4R434 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TMEM56-RWDD3S4R434 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TMEM56-RWDD3S4R434 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TMEM56-RWDD3S4R434 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC21.64■■□□□ 1.05
TMEM56-RWDD3S4R434 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.63■■□□□ 1.05
TMEM56-RWDD3S4R434 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TMEM56-RWDD3S4R434 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
TMEM56-RWDD3S4R434 AL139393.2-201ENST00000608721 2025 ntBASIC21.62■■□□□ 1.05
TMEM56-RWDD3S4R434 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
TMEM56-RWDD3S4R434 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TMEM56-RWDD3S4R434 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
TMEM56-RWDD3S4R434 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.6■■□□□ 1.05
TMEM56-RWDD3S4R434 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TMEM56-RWDD3S4R434 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
TMEM56-RWDD3S4R434 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TMEM56-RWDD3S4R434 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
TMEM56-RWDD3S4R434 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
TMEM56-RWDD3S4R434 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TMEM56-RWDD3S4R434 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
TMEM56-RWDD3S4R434 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TMEM56-RWDD3S4R434 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
TMEM56-RWDD3S4R434 AL031258.1-201ENST00000623562 325 ntBASIC21.55■■□□□ 1.04
TMEM56-RWDD3S4R434 DRD5P2-201ENST00000421395 2012 ntBASIC21.55■■□□□ 1.04
TMEM56-RWDD3S4R434 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TMEM56-RWDD3S4R434 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
TMEM56-RWDD3S4R434 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
TMEM56-RWDD3S4R434 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TMEM56-RWDD3S4R434 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
TMEM56-RWDD3S4R434 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TMEM56-RWDD3S4R434 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
TMEM56-RWDD3S4R434 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
TMEM56-RWDD3S4R434 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TMEM56-RWDD3S4R434 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC21.48■■□□□ 1.03
TMEM56-RWDD3S4R434 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 10 ms