Protein–RNA interactions for Protein: Q8TEJ3

SH3RF3, SH3 domain-containing RING finger protein 3, humanhuman

Predicted RBP Predictions only

Length 882 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF3Q8TEJ3 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
SH3RF3Q8TEJ3 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC32.12■■■□□ 2.73
SH3RF3Q8TEJ3 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
SH3RF3Q8TEJ3 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
SH3RF3Q8TEJ3 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
SH3RF3Q8TEJ3 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC32.11■■■□□ 2.73
SH3RF3Q8TEJ3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
SH3RF3Q8TEJ3 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC32.1■■■□□ 2.73
SH3RF3Q8TEJ3 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SH3RF3Q8TEJ3 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
SH3RF3Q8TEJ3 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
SH3RF3Q8TEJ3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC32.07■■■□□ 2.72
SH3RF3Q8TEJ3 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC32.07■■■□□ 2.72
SH3RF3Q8TEJ3 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC32.06■■■□□ 2.72
SH3RF3Q8TEJ3 MIR7108-201ENST00000614319 87 ntBASIC32.06■■■□□ 2.72
SH3RF3Q8TEJ3 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
SH3RF3Q8TEJ3 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
SH3RF3Q8TEJ3 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
SH3RF3Q8TEJ3 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC32.04■■■□□ 2.72
SH3RF3Q8TEJ3 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC32.04■■■□□ 2.72
SH3RF3Q8TEJ3 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC32.04■■■□□ 2.72
SH3RF3Q8TEJ3 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
SH3RF3Q8TEJ3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
SH3RF3Q8TEJ3 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC32.02■■■□□ 2.72
SH3RF3Q8TEJ3 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
SH3RF3Q8TEJ3 MIR6090-201ENST00000622481 60 ntBASIC31.99■■■□□ 2.71
SH3RF3Q8TEJ3 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.99■■■□□ 2.71
SH3RF3Q8TEJ3 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
SH3RF3Q8TEJ3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC31.97■■■□□ 2.71
SH3RF3Q8TEJ3 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
SH3RF3Q8TEJ3 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
SH3RF3Q8TEJ3 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
SH3RF3Q8TEJ3 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC31.95■■■□□ 2.71
SH3RF3Q8TEJ3 ZNRF2P2-203ENST00000454624 420 ntBASIC31.95■■■□□ 2.71
SH3RF3Q8TEJ3 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC31.95■■■□□ 2.7
SH3RF3Q8TEJ3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.94■■■□□ 2.7
SH3RF3Q8TEJ3 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.94■■■□□ 2.7
SH3RF3Q8TEJ3 AC108673.1-201ENST00000510422 1159 ntBASIC31.92■■■□□ 2.7
SH3RF3Q8TEJ3 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC31.92■■■□□ 2.7
SH3RF3Q8TEJ3 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
SH3RF3Q8TEJ3 AL161658.1-201ENST00000623641 1967 ntBASIC31.91■■■□□ 2.7
SH3RF3Q8TEJ3 DUX4L29-201ENST00000425409 679 ntBASIC31.91■■■□□ 2.7
SH3RF3Q8TEJ3 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
SH3RF3Q8TEJ3 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC31.9■■■□□ 2.7
SH3RF3Q8TEJ3 CIB2-204ENST00000557846 934 ntTSL 3 BASIC31.9■■■□□ 2.7
SH3RF3Q8TEJ3 AC021231.2-201ENST00000594613 730 ntBASIC31.89■■■□□ 2.7
SH3RF3Q8TEJ3 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.7
SH3RF3Q8TEJ3 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC31.87■■■□□ 2.69
SH3RF3Q8TEJ3 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC31.87■■■□□ 2.69
SH3RF3Q8TEJ3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SH3RF3Q8TEJ3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
SH3RF3Q8TEJ3 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
SH3RF3Q8TEJ3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SH3RF3Q8TEJ3 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SH3RF3Q8TEJ3 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.85■■■□□ 2.69
SH3RF3Q8TEJ3 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SH3RF3Q8TEJ3 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.84■■■□□ 2.69
SH3RF3Q8TEJ3 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
SH3RF3Q8TEJ3 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC31.84■■■□□ 2.69
SH3RF3Q8TEJ3 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC31.83■■■□□ 2.69
SH3RF3Q8TEJ3 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SH3RF3Q8TEJ3 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC31.83■■■□□ 2.69
SH3RF3Q8TEJ3 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.83■■■□□ 2.69
SH3RF3Q8TEJ3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.82■■■□□ 2.69
SH3RF3Q8TEJ3 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC31.82■■■□□ 2.68
SH3RF3Q8TEJ3 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SH3RF3Q8TEJ3 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SH3RF3Q8TEJ3 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SH3RF3Q8TEJ3 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
SH3RF3Q8TEJ3 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.81■■■□□ 2.68
SH3RF3Q8TEJ3 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SH3RF3Q8TEJ3 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SH3RF3Q8TEJ3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC31.8■■■□□ 2.68
SH3RF3Q8TEJ3 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
SH3RF3Q8TEJ3 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
SH3RF3Q8TEJ3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.8■■■□□ 2.68
SH3RF3Q8TEJ3 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SH3RF3Q8TEJ3 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SH3RF3Q8TEJ3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SH3RF3Q8TEJ3 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.78■■■□□ 2.68
SH3RF3Q8TEJ3 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
SH3RF3Q8TEJ3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
SH3RF3Q8TEJ3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
SH3RF3Q8TEJ3 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.77■■■□□ 2.68
SH3RF3Q8TEJ3 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
SH3RF3Q8TEJ3 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
SH3RF3Q8TEJ3 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
SH3RF3Q8TEJ3 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
SH3RF3Q8TEJ3 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
SH3RF3Q8TEJ3 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
SH3RF3Q8TEJ3 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
SH3RF3Q8TEJ3 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SH3RF3Q8TEJ3 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SH3RF3Q8TEJ3 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
SH3RF3Q8TEJ3 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
SH3RF3Q8TEJ3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.7■■■□□ 2.66
SH3RF3Q8TEJ3 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
SH3RF3Q8TEJ3 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.68■■■□□ 2.66
SH3RF3Q8TEJ3 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
SH3RF3Q8TEJ3 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC31.67■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms