Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.3■■□□□ 1.8
LMX1AQ8TE12 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.3■■□□□ 1.8
LMX1AQ8TE12 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC26.3■■□□□ 1.8
LMX1AQ8TE12 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
LMX1AQ8TE12 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
LMX1AQ8TE12 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.28■■□□□ 1.8
LMX1AQ8TE12 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
LMX1AQ8TE12 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
LMX1AQ8TE12 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
LMX1AQ8TE12 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
LMX1AQ8TE12 AC120057.4-201ENST00000624722 1615 ntBASIC26.26■■□□□ 1.79
LMX1AQ8TE12 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
LMX1AQ8TE12 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
LMX1AQ8TE12 HLA-V-202ENST00000446817 847 ntBASIC26.25■■□□□ 1.79
LMX1AQ8TE12 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
LMX1AQ8TE12 AC108673.1-201ENST00000510422 1159 ntBASIC26.24■■□□□ 1.79
LMX1AQ8TE12 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.24■■□□□ 1.79
LMX1AQ8TE12 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
LMX1AQ8TE12 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
LMX1AQ8TE12 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
LMX1AQ8TE12 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.22■■□□□ 1.79
LMX1AQ8TE12 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
LMX1AQ8TE12 AC021231.2-201ENST00000594613 730 ntBASIC26.22■■□□□ 1.79
LMX1AQ8TE12 MIR6090-201ENST00000622481 60 ntBASIC26.22■■□□□ 1.79
LMX1AQ8TE12 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
LMX1AQ8TE12 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
LMX1AQ8TE12 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
LMX1AQ8TE12 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
LMX1AQ8TE12 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
LMX1AQ8TE12 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC26.2■■□□□ 1.78
LMX1AQ8TE12 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC26.2■■□□□ 1.78
LMX1AQ8TE12 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.19■■□□□ 1.78
LMX1AQ8TE12 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
LMX1AQ8TE12 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
LMX1AQ8TE12 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
LMX1AQ8TE12 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.17■■□□□ 1.78
LMX1AQ8TE12 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.17■■□□□ 1.78
LMX1AQ8TE12 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.17■■□□□ 1.78
LMX1AQ8TE12 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
LMX1AQ8TE12 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC26.16■■□□□ 1.78
LMX1AQ8TE12 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.78
LMX1AQ8TE12 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC26.14■■□□□ 1.78
LMX1AQ8TE12 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC26.14■■□□□ 1.78
LMX1AQ8TE12 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
LMX1AQ8TE12 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.13■■□□□ 1.77
LMX1AQ8TE12 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
LMX1AQ8TE12 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
LMX1AQ8TE12 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
LMX1AQ8TE12 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
LMX1AQ8TE12 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
LMX1AQ8TE12 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
LMX1AQ8TE12 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
LMX1AQ8TE12 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
LMX1AQ8TE12 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC26.09■■□□□ 1.77
LMX1AQ8TE12 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC26.09■■□□□ 1.77
LMX1AQ8TE12 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
LMX1AQ8TE12 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
LMX1AQ8TE12 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
LMX1AQ8TE12 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.05■■□□□ 1.76
LMX1AQ8TE12 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
LMX1AQ8TE12 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
LMX1AQ8TE12 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC26.04■■□□□ 1.76
LMX1AQ8TE12 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.03■■□□□ 1.76
LMX1AQ8TE12 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.03■■□□□ 1.76
LMX1AQ8TE12 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
LMX1AQ8TE12 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.03■■□□□ 1.76
LMX1AQ8TE12 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC26.03■■□□□ 1.76
LMX1AQ8TE12 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
LMX1AQ8TE12 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
LMX1AQ8TE12 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC26.01■■□□□ 1.75
LMX1AQ8TE12 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
LMX1AQ8TE12 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
LMX1AQ8TE12 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.99■■□□□ 1.75
LMX1AQ8TE12 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
LMX1AQ8TE12 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
LMX1AQ8TE12 RPS2-202ENST00000526522 924 ntTSL 2 BASIC25.98■■□□□ 1.75
LMX1AQ8TE12 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC25.98■■□□□ 1.75
LMX1AQ8TE12 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.97■■□□□ 1.75
LMX1AQ8TE12 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.97■■□□□ 1.75
LMX1AQ8TE12 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
LMX1AQ8TE12 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
LMX1AQ8TE12 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
LMX1AQ8TE12 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.94■■□□□ 1.74
LMX1AQ8TE12 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC25.94■■□□□ 1.74
LMX1AQ8TE12 AL161658.1-201ENST00000623641 1967 ntBASIC25.93■■□□□ 1.74
LMX1AQ8TE12 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
LMX1AQ8TE12 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
LMX1AQ8TE12 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
LMX1AQ8TE12 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
LMX1AQ8TE12 LINC01971-201ENST00000617888 1048 ntBASIC25.92■■□□□ 1.74
LMX1AQ8TE12 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC25.92■■□□□ 1.74
LMX1AQ8TE12 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
LMX1AQ8TE12 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
LMX1AQ8TE12 DUX4L11-201ENST00000611504 1267 ntBASIC25.91■■□□□ 1.74
LMX1AQ8TE12 DUX4L12-201ENST00000614593 1267 ntBASIC25.91■■□□□ 1.74
LMX1AQ8TE12 DUX4L14-201ENST00000621227 1267 ntBASIC25.91■■□□□ 1.74
LMX1AQ8TE12 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
LMX1AQ8TE12 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
LMX1AQ8TE12 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
LMX1AQ8TE12 MIR3648-2-201ENST00000581792 180 ntBASIC25.89■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 8.7 ms