Protein–RNA interactions for Protein: Q80W14

Prpf40b, Pre-mRNA-processing factor 40 homolog B, mousemouse

Predictions only

Length 870 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40bQ80W14 AC157572.2-201ENSMUST00000226970 908 ntBASIC28.59■■■□□ 2.17
Prpf40bQ80W14 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Prpf40bQ80W14 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Prpf40bQ80W14 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC28.57■■■□□ 2.16
Prpf40bQ80W14 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC28.55■■■□□ 2.16
Prpf40bQ80W14 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
Prpf40bQ80W14 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
Prpf40bQ80W14 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC28.54■■■□□ 2.16
Prpf40bQ80W14 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC28.54■■■□□ 2.16
Prpf40bQ80W14 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Prpf40bQ80W14 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Prpf40bQ80W14 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Prpf40bQ80W14 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
Prpf40bQ80W14 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC28.52■■■□□ 2.16
Prpf40bQ80W14 Gm7432-201ENSMUST00000210343 879 ntBASIC28.51■■■□□ 2.15
Prpf40bQ80W14 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Prpf40bQ80W14 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Prpf40bQ80W14 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC28.5■■■□□ 2.15
Prpf40bQ80W14 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC28.5■■■□□ 2.15
Prpf40bQ80W14 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
Prpf40bQ80W14 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC28.49■■■□□ 2.15
Prpf40bQ80W14 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Prpf40bQ80W14 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Prpf40bQ80W14 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
Prpf40bQ80W14 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC28.47■■■□□ 2.15
Prpf40bQ80W14 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
Prpf40bQ80W14 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Prpf40bQ80W14 Nkain2-201ENSMUST00000092602 558 ntBASIC28.46■■■□□ 2.15
Prpf40bQ80W14 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
Prpf40bQ80W14 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
Prpf40bQ80W14 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC28.44■■■□□ 2.14
Prpf40bQ80W14 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
Prpf40bQ80W14 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC28.43■■■□□ 2.14
Prpf40bQ80W14 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC28.43■■■□□ 2.14
Prpf40bQ80W14 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Prpf40bQ80W14 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Prpf40bQ80W14 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC28.42■■■□□ 2.14
Prpf40bQ80W14 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC28.42■■■□□ 2.14
Prpf40bQ80W14 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
Prpf40bQ80W14 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC28.41■■■□□ 2.14
Prpf40bQ80W14 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC28.4■■■□□ 2.14
Prpf40bQ80W14 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC28.4■■■□□ 2.14
Prpf40bQ80W14 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC28.39■■■□□ 2.14
Prpf40bQ80W14 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Prpf40bQ80W14 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Prpf40bQ80W14 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Prpf40bQ80W14 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC28.36■■■□□ 2.13
Prpf40bQ80W14 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Prpf40bQ80W14 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Prpf40bQ80W14 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
Prpf40bQ80W14 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Prpf40bQ80W14 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
Prpf40bQ80W14 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC28.31■■■□□ 2.12
Prpf40bQ80W14 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
Prpf40bQ80W14 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Prpf40bQ80W14 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
Prpf40bQ80W14 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC28.28■■■□□ 2.12
Prpf40bQ80W14 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
Prpf40bQ80W14 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Prpf40bQ80W14 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC28.27■■■□□ 2.12
Prpf40bQ80W14 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC28.26■■■□□ 2.11
Prpf40bQ80W14 Gm11599-201ENSMUST00000118720 878 ntBASIC28.26■■■□□ 2.11
Prpf40bQ80W14 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC28.26■■■□□ 2.11
Prpf40bQ80W14 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Prpf40bQ80W14 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Prpf40bQ80W14 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Prpf40bQ80W14 Mir6538-201ENSMUST00000183713 110 ntBASIC28.24■■■□□ 2.11
Prpf40bQ80W14 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Prpf40bQ80W14 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
Prpf40bQ80W14 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
Prpf40bQ80W14 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Prpf40bQ80W14 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Prpf40bQ80W14 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Prpf40bQ80W14 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Prpf40bQ80W14 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC28.22■■■□□ 2.11
Prpf40bQ80W14 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC28.22■■■□□ 2.11
Prpf40bQ80W14 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Prpf40bQ80W14 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
Prpf40bQ80W14 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Prpf40bQ80W14 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Prpf40bQ80W14 Gm11175-201ENSMUST00000116172 543 ntBASIC28.19■■■□□ 2.1
Prpf40bQ80W14 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC28.19■■■□□ 2.1
Prpf40bQ80W14 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Prpf40bQ80W14 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Prpf40bQ80W14 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
Prpf40bQ80W14 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Prpf40bQ80W14 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Prpf40bQ80W14 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
Prpf40bQ80W14 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC28.17■■■□□ 2.1
Prpf40bQ80W14 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC28.17■■■□□ 2.1
Prpf40bQ80W14 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Prpf40bQ80W14 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
Prpf40bQ80W14 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Prpf40bQ80W14 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC28.15■■■□□ 2.1
Prpf40bQ80W14 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Prpf40bQ80W14 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
Prpf40bQ80W14 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
Prpf40bQ80W14 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
Prpf40bQ80W14 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Prpf40bQ80W14 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
Retrieved 100 of 76,532 protein–RNA pairs in 8.6 ms