Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC39.13■■■■□ 3.85
CLTCL1P53675 MBP-237ENST00000579129 1052 ntTSL 5 BASIC39.11■■■■□ 3.85
CLTCL1P53675 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC39.1■■■■□ 3.85
CLTCL1P53675 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC39.1■■■■□ 3.85
CLTCL1P53675 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC39.09■■■■□ 3.85
CLTCL1P53675 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC39.09■■■■□ 3.85
CLTCL1P53675 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC39.09■■■■□ 3.85
CLTCL1P53675 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC39.09■■■■□ 3.85
CLTCL1P53675 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC39.08■■■■□ 3.85
CLTCL1P53675 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC39.07■■■■□ 3.85
CLTCL1P53675 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC39.07■■■■□ 3.84
CLTCL1P53675 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC39.07■■■■□ 3.84
CLTCL1P53675 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC39.06■■■■□ 3.84
CLTCL1P53675 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC39.05■■■■□ 3.84
CLTCL1P53675 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC39.05■■■■□ 3.84
CLTCL1P53675 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC39.05■■■■□ 3.84
CLTCL1P53675 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC39.04■■■■□ 3.84
CLTCL1P53675 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC39.04■■■■□ 3.84
CLTCL1P53675 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC39.03■■■■□ 3.84
CLTCL1P53675 MIR6090-201ENST00000622481 60 ntBASIC39.03■■■■□ 3.84
CLTCL1P53675 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC39.02■■■■□ 3.84
CLTCL1P53675 DUX4L29-201ENST00000425409 679 ntBASIC39.01■■■■□ 3.84
CLTCL1P53675 AC021231.2-201ENST00000594613 730 ntBASIC39.01■■■■□ 3.84
CLTCL1P53675 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC38.98■■■■□ 3.83
CLTCL1P53675 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC38.98■■■■□ 3.83
CLTCL1P53675 RPS2-202ENST00000526522 924 ntTSL 2 BASIC38.98■■■■□ 3.83
CLTCL1P53675 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC38.98■■■■□ 3.83
CLTCL1P53675 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC38.98■■■■□ 3.83
CLTCL1P53675 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC38.96■■■■□ 3.83
CLTCL1P53675 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC38.96■■■■□ 3.83
CLTCL1P53675 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC38.93■■■■□ 3.82
CLTCL1P53675 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC38.93■■■■□ 3.82
CLTCL1P53675 AC108673.1-201ENST00000510422 1159 ntBASIC38.93■■■■□ 3.82
CLTCL1P53675 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC38.93■■■■□ 3.82
CLTCL1P53675 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC38.92■■■■□ 3.82
CLTCL1P53675 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC38.92■■■■□ 3.82
CLTCL1P53675 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC38.92■■■■□ 3.82
CLTCL1P53675 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC38.92■■■■□ 3.82
CLTCL1P53675 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC38.91■■■■□ 3.82
CLTCL1P53675 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC38.89■■■■□ 3.82
CLTCL1P53675 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC38.89■■■■□ 3.82
CLTCL1P53675 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC38.88■■■■□ 3.82
CLTCL1P53675 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC38.88■■■■□ 3.81
CLTCL1P53675 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC38.87■■■■□ 3.81
CLTCL1P53675 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC38.87■■■■□ 3.81
CLTCL1P53675 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC38.87■■■■□ 3.81
CLTCL1P53675 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC38.87■■■■□ 3.81
CLTCL1P53675 CIB2-204ENST00000557846 934 ntTSL 3 BASIC38.86■■■■□ 3.81
CLTCL1P53675 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC38.86■■■■□ 3.81
CLTCL1P53675 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC38.85■■■■□ 3.81
CLTCL1P53675 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC38.83■■■■□ 3.81
CLTCL1P53675 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC38.83■■■■□ 3.81
CLTCL1P53675 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC38.83■■■■□ 3.81
CLTCL1P53675 MACF1-219ENST00000484793 834 ntTSL 2 BASIC38.82■■■■□ 3.81
CLTCL1P53675 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC38.82■■■■□ 3.81
CLTCL1P53675 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC38.82■■■■□ 3.81
CLTCL1P53675 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
CLTCL1P53675 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC38.8■■■■□ 3.8
CLTCL1P53675 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC38.79■■■■□ 3.8
CLTCL1P53675 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC38.79■■■■□ 3.8
CLTCL1P53675 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC38.74■■■■□ 3.79
CLTCL1P53675 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
CLTCL1P53675 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
CLTCL1P53675 CR559946.2-201ENST00000623684 991 ntBASIC38.73■■■■□ 3.79
CLTCL1P53675 RNF166-209ENST00000567844 633 ntTSL 5 BASIC38.72■■■■□ 3.79
CLTCL1P53675 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC38.71■■■■□ 3.79
CLTCL1P53675 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC38.71■■■■□ 3.79
CLTCL1P53675 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC38.69■■■■□ 3.78
CLTCL1P53675 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC38.68■■■■□ 3.78
CLTCL1P53675 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC38.67■■■■□ 3.78
CLTCL1P53675 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC38.67■■■■□ 3.78
CLTCL1P53675 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC38.67■■■■□ 3.78
CLTCL1P53675 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC38.66■■■■□ 3.78
CLTCL1P53675 MIR4449-201ENST00000578365 66 ntBASIC38.66■■■■□ 3.78
CLTCL1P53675 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC38.65■■■■□ 3.78
CLTCL1P53675 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC38.65■■■■□ 3.78
CLTCL1P53675 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC38.64■■■■□ 3.78
CLTCL1P53675 GDI1-215ENST00000630693 786 ntTSL 4 BASIC38.63■■■■□ 3.78
CLTCL1P53675 LINC01971-201ENST00000617888 1048 ntBASIC38.63■■■■□ 3.77
CLTCL1P53675 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC38.61■■■■□ 3.77
CLTCL1P53675 MIR3648-2-201ENST00000581792 180 ntBASIC38.61■■■■□ 3.77
CLTCL1P53675 AC016575.1-201ENST00000607026 382 ntBASIC38.61■■■■□ 3.77
CLTCL1P53675 MIR3648-1-201ENST00000615959 180 ntBASIC38.61■■■■□ 3.77
CLTCL1P53675 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC38.61■■■■□ 3.77
CLTCL1P53675 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC38.61■■■■□ 3.77
CLTCL1P53675 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC38.6■■■■□ 3.77
CLTCL1P53675 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC38.6■■■■□ 3.77
CLTCL1P53675 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC38.59■■■■□ 3.77
CLTCL1P53675 MIR639-201ENST00000384974 98 ntBASIC38.59■■■■□ 3.77
CLTCL1P53675 DUX4L11-201ENST00000611504 1267 ntBASIC38.59■■■■□ 3.77
CLTCL1P53675 DUX4L12-201ENST00000614593 1267 ntBASIC38.59■■■■□ 3.77
CLTCL1P53675 DUX4L14-201ENST00000621227 1267 ntBASIC38.59■■■■□ 3.77
CLTCL1P53675 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC38.58■■■■□ 3.77
CLTCL1P53675 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC38.57■■■■□ 3.77
CLTCL1P53675 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC38.56■■■■□ 3.76
CLTCL1P53675 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC38.55■■■■□ 3.76
CLTCL1P53675 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC38.54■■■■□ 3.76
CLTCL1P53675 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC38.54■■■■□ 3.76
CLTCL1P53675 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC38.54■■■■□ 3.76
CLTCL1P53675 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC38.53■■■■□ 3.76
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms