Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 RBG2YGR173W 1107 nt9.04□□□□□ -0.96
UPF3P48412 SDH5YOL071W 489 nt9.04□□□□□ -0.96
UPF3P48412 YLR437C-AYLR437C-A 228 nt9.03□□□□□ -0.96
UPF3P48412 HMG2YLR450W 3138 nt9.02□□□□□ -0.96
UPF3P48412 RSC4YKR008W 1878 nt9.02□□□□□ -0.96
UPF3P48412 HOL1YNR055C 1761 nt9.02□□□□□ -0.97
UPF3P48412 RIB3YDR487C 627 nt9.02□□□□□ -0.97
UPF3P48412 YOR325WYOR325W 474 nt9.02□□□□□ -0.97
UPF3P48412 MUP1YGR055W 1725 nt9.02□□□□□ -0.97
UPF3P48412 MEP3YPR138C 1470 nt9.02□□□□□ -0.97
UPF3P48412 YMR103CYMR103C 363 nt9.01□□□□□ -0.97
UPF3P48412 OPI10YOL032W 741 nt9.01□□□□□ -0.97
UPF3P48412 HEM14YER014W 1620 nt9.01□□□□□ -0.97
UPF3P48412 YNL024CYNL024C 741 nt9□□□□□ -0.97
UPF3P48412 NME1NME1 340 nt9□□□□□ -0.97
UPF3P48412 YLR111WYLR111W 333 nt8.99□□□□□ -0.97
UPF3P48412 APT2YDR441C 546 nt8.98□□□□□ -0.97
UPF3P48412 OXA1YER154W 1209 nt8.97□□□□□ -0.97
UPF3P48412 FCY21YER060W 1587 nt8.97□□□□□ -0.97
UPF3P48412 UGA4YDL210W 1716 nt8.97□□□□□ -0.97
UPF3P48412 TPO4YOR273C 1980 nt8.96□□□□□ -0.98
UPF3P48412 SEC61YLR378C 1443 nt8.96□□□□□ -0.98
UPF3P48412 MAE1YKL029C 2010 nt8.95□□□□□ -0.98
UPF3P48412 SAM2YDR502C 1155 nt8.95□□□□□ -0.98
UPF3P48412 YJR154WYJR154W 1041 nt8.95□□□□□ -0.98
UPF3P48412 YDR306CYDR306C 1437 nt8.95□□□□□ -0.98
UPF3P48412 FMS1YMR020W 1527 nt8.95□□□□□ -0.98
UPF3P48412 CCT2YIL142W 1584 nt8.95□□□□□ -0.98
UPF3P48412 YPL222C-AYPL222C-A 246 nt8.94□□□□□ -0.98
UPF3P48412 PUS7YOR243C 2031 nt8.93□□□□□ -0.98
UPF3P48412 SPP2YOR148C 558 nt8.93□□□□□ -0.98
UPF3P48412 ACH1YBL015W 1581 nt8.93□□□□□ -0.98
UPF3P48412 RSC8YFR037C 1674 nt8.93□□□□□ -0.98
UPF3P48412 YGL114WYGL114W 2178 nt8.92□□□□□ -0.98
UPF3P48412 FLR1YBR008C 1647 nt8.91□□□□□ -0.98
UPF3P48412 YPS3YLR121C 1527 nt8.91□□□□□ -0.98
UPF3P48412 DTR1YBR180W 1719 nt8.9□□□□□ -0.98
UPF3P48412 RIM8YGL045W 1629 nt8.9□□□□□ -0.99
UPF3P48412 COQ8YGL119W 1506 nt8.9□□□□□ -0.99
UPF3P48412 PHO23YNL097C 993 nt8.89□□□□□ -0.99
UPF3P48412 DLD2YDL178W 1593 nt8.89□□□□□ -0.99
UPF3P48412 GND1YHR183W 1470 nt8.89□□□□□ -0.99
UPF3P48412 VPS62YGR141W 1404 nt8.88□□□□□ -0.99
UPF3P48412 ARO8YGL202W 1503 nt8.88□□□□□ -0.99
UPF3P48412 LSB6YJL100W 1824 nt8.87□□□□□ -0.99
UPF3P48412 MSC1YML128C 1542 nt8.86□□□□□ -0.99
UPF3P48412 YDL086WYDL086W 822 nt8.86□□□□□ -0.99
UPF3P48412 ILV2YMR108W 2064 nt8.85□□□□□ -0.99
UPF3P48412 BNI5YNL166C 1347 nt8.85□□□□□ -0.99
UPF3P48412 YER188WYER188W 720 nt8.85□□□□□ -0.99
UPF3P48412 HIS2YFR025C 1008 nt8.84□□□□□ -0.99
UPF3P48412 KES1YPL145C 1305 nt8.83□□□□□ -1
UPF3P48412 SMM1YNR015W 1155 nt8.83□□□□□ -1
UPF3P48412 FUB1YCR076C 753 nt8.82□□□□□ -1
UPF3P48412 UGP1YKL035W 1500 nt8.81□□□□□ -1
UPF3P48412 URA8YJR103W 1737 nt8.81□□□□□ -1
UPF3P48412 CSM1YCR086W 573 nt8.81□□□□□ -1
UPF3P48412 HEM13YDR044W 987 nt8.81□□□□□ -1
UPF3P48412 LOT5YKL183W 921 nt8.81□□□□□ -1
UPF3P48412 SGA1YIL099W 1650 nt8.81□□□□□ -1
UPF3P48412 GTB1YDR221W 2109 nt8.8□□□□□ -1
UPF3P48412 PRY1YJL079C 900 nt8.8□□□□□ -1
UPF3P48412 BET2YPR176C 978 nt8.79□□□□□ -1
UPF3P48412 HXT12YIL170W 1374 nt8.77□□□□□ -1.01
UPF3P48412 DIG1YPL049C 1359 nt8.77□□□□□ -1.01
UPF3P48412 NUC1YJL208C 990 nt8.77□□□□□ -1.01
UPF3P48412 OSH7YHR001W 1314 nt8.77□□□□□ -1.01
UPF3P48412 QDR2YIL121W 1629 nt8.76□□□□□ -1.01
UPF3P48412 YPI1YFR003C 468 nt8.76□□□□□ -1.01
UPF3P48412 YNR029CYNR029C 1290 nt8.75□□□□□ -1.01
UPF3P48412 ADH1YOL086C 1047 nt8.75□□□□□ -1.01
UPF3P48412 LSB5YCL034W 1065 nt8.74□□□□□ -1.01
UPF3P48412 ZAP1YJL056C 2643 nt8.73□□□□□ -1.01
UPF3P48412 YRF1-2YER190W 5046 nt8.73□□□□□ -1.01
UPF3P48412 GNP1YDR508C 1992 nt8.73□□□□□ -1.01
UPF3P48412 ACO2YJL200C 2370 nt8.72□□□□□ -1.01
UPF3P48412 RAS2YNL098C 969 nt8.72□□□□□ -1.01
UPF3P48412 LSB3YFR024C-A 1380 nt8.71□□□□□ -1.02
UPF3P48412 RPT5YOR117W 1305 nt8.7□□□□□ -1.02
UPF3P48412 SAM3YPL274W 1764 nt8.7□□□□□ -1.02
UPF3P48412 SOL2YCR073W-A 948 nt8.67□□□□□ -1.02
UPF3P48412 YJL118WYJL118W 660 nt8.67□□□□□ -1.02
UPF3P48412 GID8YMR135C 1368 nt8.67□□□□□ -1.02
UPF3P48412 YMR209CYMR209C 1374 nt8.67□□□□□ -1.02
UPF3P48412 GPN2YOR262W 1044 nt8.67□□□□□ -1.02
UPF3P48412 TAT2YOL020W 1779 nt8.66□□□□□ -1.02
UPF3P48412 RIB2YOL066C 1776 nt8.66□□□□□ -1.02
UPF3P48412 OYE2YHR179W 1203 nt8.66□□□□□ -1.02
UPF3P48412 AIM1YAL046C 357 nt8.66□□□□□ -1.02
UPF3P48412 ENT4YLL038C 744 nt8.66□□□□□ -1.02
UPF3P48412 EAF3YPR023C 1206 nt8.66□□□□□ -1.02
UPF3P48412 ASP3-1YLR155C 1089 nt8.65□□□□□ -1.02
UPF3P48412 ASP3-2YLR157C 1089 nt8.65□□□□□ -1.02
UPF3P48412 ASP3-3YLR158C 1089 nt8.65□□□□□ -1.02
UPF3P48412 ASP3-4YLR160C 1089 nt8.65□□□□□ -1.02
UPF3P48412 VRG4YGL225W 1014 nt8.64□□□□□ -1.03
UPF3P48412 GAL2YLR081W 1725 nt8.63□□□□□ -1.03
UPF3P48412 YJL055WYJL055W 738 nt8.63□□□□□ -1.03
UPF3P48412 FUN14YAL008W 597 nt8.62□□□□□ -1.03
UPF3P48412 YLR046CYLR046C 813 nt8.62□□□□□ -1.03
Retrieved 100 of 7,029 protein–RNA pairs in 21.2 ms