Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 DUX4L14-201ENST00000621227 1267 ntBASIC27.27■■□□□ 1.96
CXCL12P48061 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC27.26■■□□□ 1.95
CXCL12P48061 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC27.26■■□□□ 1.95
CXCL12P48061 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC27.26■■□□□ 1.95
CXCL12P48061 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC27.26■■□□□ 1.95
CXCL12P48061 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC27.26■■□□□ 1.95
CXCL12P48061 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC27.25■■□□□ 1.95
CXCL12P48061 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
CXCL12P48061 LINC01971-201ENST00000617888 1048 ntBASIC27.25■■□□□ 1.95
CXCL12P48061 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CXCL12P48061 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC27.25■■□□□ 1.95
CXCL12P48061 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CXCL12P48061 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CXCL12P48061 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC27.24■■□□□ 1.95
CXCL12P48061 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
CXCL12P48061 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CXCL12P48061 CR559946.2-201ENST00000623684 991 ntBASIC27.22■■□□□ 1.95
CXCL12P48061 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CXCL12P48061 BRD4-212ENST00000630599 726 ntTSL 2 BASIC27.21■■□□□ 1.95
CXCL12P48061 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CXCL12P48061 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.95
CXCL12P48061 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
CXCL12P48061 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
CXCL12P48061 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
CXCL12P48061 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.17■■□□□ 1.94
CXCL12P48061 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CXCL12P48061 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CXCL12P48061 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
CXCL12P48061 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CXCL12P48061 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
CXCL12P48061 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC27.16■■□□□ 1.94
CXCL12P48061 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
CXCL12P48061 ABHD17AP3-201ENST00000503096 1137 ntBASIC27.14■■□□□ 1.94
CXCL12P48061 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC27.14■■□□□ 1.94
CXCL12P48061 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
CXCL12P48061 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CXCL12P48061 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
CXCL12P48061 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CXCL12P48061 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CXCL12P48061 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC27.12■■□□□ 1.93
CXCL12P48061 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC27.11■■□□□ 1.93
CXCL12P48061 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CXCL12P48061 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC27.11■■□□□ 1.93
CXCL12P48061 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CXCL12P48061 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CXCL12P48061 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
CXCL12P48061 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CXCL12P48061 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC27.08■■□□□ 1.93
CXCL12P48061 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC27.07■■□□□ 1.92
CXCL12P48061 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC27.06■■□□□ 1.92
CXCL12P48061 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.92
CXCL12P48061 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
CXCL12P48061 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CXCL12P48061 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
CXCL12P48061 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC27.04■■□□□ 1.92
CXCL12P48061 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
CXCL12P48061 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
CXCL12P48061 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC27.03■■□□□ 1.92
CXCL12P48061 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
CXCL12P48061 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC27.01■■□□□ 1.92
CXCL12P48061 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
CXCL12P48061 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC27.01■■□□□ 1.91
CXCL12P48061 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC27■■□□□ 1.91
CXCL12P48061 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
CXCL12P48061 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC27■■□□□ 1.91
CXCL12P48061 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
CXCL12P48061 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91
CXCL12P48061 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
CXCL12P48061 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.98■■□□□ 1.91
CXCL12P48061 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.98■■□□□ 1.91
CXCL12P48061 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC26.98■■□□□ 1.91
CXCL12P48061 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC26.98■■□□□ 1.91
CXCL12P48061 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.97■■□□□ 1.91
CXCL12P48061 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.97■■□□□ 1.91
CXCL12P48061 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CXCL12P48061 METRNL-202ENST00000570778 967 ntTSL 5 BASIC26.96■■□□□ 1.91
CXCL12P48061 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CXCL12P48061 DUX4L13-201ENST00000554103 1267 ntBASIC26.95■■□□□ 1.9
CXCL12P48061 DUX4L15-201ENST00000611059 1267 ntBASIC26.95■■□□□ 1.9
CXCL12P48061 DUX4L23-201ENST00000615195 1269 ntBASIC26.95■■□□□ 1.9
CXCL12P48061 DUX4L24-201ENST00000617576 1269 ntBASIC26.95■■□□□ 1.9
CXCL12P48061 DUX4L22-201ENST00000618238 1269 ntBASIC26.95■■□□□ 1.9
CXCL12P48061 DUX4L20-201ENST00000619712 1269 ntBASIC26.95■■□□□ 1.9
CXCL12P48061 DUX4L21-201ENST00000622058 1269 ntBASIC26.95■■□□□ 1.9
CXCL12P48061 DUX4L10-201ENST00000622460 1267 ntBASIC26.95■■□□□ 1.9
CXCL12P48061 DUX4L25-201ENST00000624915 1269 ntBASIC26.95■■□□□ 1.9
CXCL12P48061 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC26.94■■□□□ 1.9
CXCL12P48061 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CXCL12P48061 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CXCL12P48061 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CXCL12P48061 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CXCL12P48061 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC26.9■■□□□ 1.9
CXCL12P48061 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CXCL12P48061 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.89■■□□□ 1.9
CXCL12P48061 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC26.89■■□□□ 1.9
CXCL12P48061 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.89
CXCL12P48061 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
CXCL12P48061 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
CXCL12P48061 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CXCL12P48061 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms