Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 HIF1YLL022C 1158 nt8.43□□□□□ -1.06
CUP9P41817 YMR103CYMR103C 363 nt8.43□□□□□ -1.06
CUP9P41817 LSB5YCL034W 1065 nt8.43□□□□□ -1.06
CUP9P41817 CCT5YJR064W 1689 nt8.41□□□□□ -1.06
CUP9P41817 NAP1YKR048C 1254 nt8.39□□□□□ -1.07
CUP9P41817 SSN3YPL042C 1668 nt8.38□□□□□ -1.07
CUP9P41817 TRT2tT(CGU)K 72 nt8.38□□□□□ -1.07
CUP9P41817 NUC1YJL208C 990 nt8.38□□□□□ -1.07
CUP9P41817 YJL118WYJL118W 660 nt8.37□□□□□ -1.07
CUP9P41817 PHO23YNL097C 993 nt8.37□□□□□ -1.07
CUP9P41817 YAT1YAR035W 2064 nt8.36□□□□□ -1.07
CUP9P41817 RPT5YOR117W 1305 nt8.36□□□□□ -1.07
CUP9P41817 SHY1YGR112W 1170 nt8.36□□□□□ -1.07
CUP9P41817 SEN2YLR105C 1134 nt8.36□□□□□ -1.07
CUP9P41817 RIB7YBR153W 735 nt8.36□□□□□ -1.07
CUP9P41817 GND2YGR256W 1479 nt8.36□□□□□ -1.07
CUP9P41817 PAU5YFL020C 369 nt8.35□□□□□ -1.07
CUP9P41817 PGC1YPL206C 966 nt8.35□□□□□ -1.07
CUP9P41817 STP3YLR375W 1032 nt8.34□□□□□ -1.07
CUP9P41817 TAF13YML098W 504 nt8.34□□□□□ -1.07
CUP9P41817 YBR232CYBR232C 360 nt8.34□□□□□ -1.07
CUP9P41817 GAL3YDR009W 1563 nt8.34□□□□□ -1.07
CUP9P41817 UFO1YML088W 2007 nt8.34□□□□□ -1.07
CUP9P41817 BNI5YNL166C 1347 nt8.33□□□□□ -1.08
CUP9P41817 SEC61YLR378C 1443 nt8.33□□□□□ -1.08
CUP9P41817 THI72YOR192C 1800 nt8.32□□□□□ -1.08
CUP9P41817 SAM2YDR502C 1155 nt8.32□□□□□ -1.08
CUP9P41817 OXA1YER154W 1209 nt8.32□□□□□ -1.08
CUP9P41817 URA6YKL024C 615 nt8.32□□□□□ -1.08
CUP9P41817 MSC1YML128C 1542 nt8.32□□□□□ -1.08
CUP9P41817 OYE3YPL171C 1203 nt8.29□□□□□ -1.08
CUP9P41817 SAM3YPL274W 1764 nt8.29□□□□□ -1.08
CUP9P41817 ZRT3YKL175W 1512 nt8.29□□□□□ -1.08
CUP9P41817 PUP1YOR157C 786 nt8.28□□□□□ -1.08
CUP9P41817 PET8YNL003C 855 nt8.26□□□□□ -1.09
CUP9P41817 YER188WYER188W 720 nt8.25□□□□□ -1.09
CUP9P41817 OYE2YHR179W 1203 nt8.23□□□□□ -1.09
CUP9P41817 SNZ1YMR096W 894 nt8.23□□□□□ -1.09
CUP9P41817 RAS2YNL098C 969 nt8.23□□□□□ -1.09
CUP9P41817 MHF1YOL086W-A 273 nt8.23□□□□□ -1.09
CUP9P41817 YPR126CYPR126C 309 nt8.23□□□□□ -1.09
CUP9P41817 CMP2YML057W 1815 nt8.22□□□□□ -1.09
CUP9P41817 TPS1YBR126C 1488 nt8.22□□□□□ -1.09
CUP9P41817 FUB1YCR076C 753 nt8.22□□□□□ -1.09
CUP9P41817 YJL064WYJL064W 396 nt8.22□□□□□ -1.09
CUP9P41817 YMR262WYMR262W 942 nt8.22□□□□□ -1.09
CUP9P41817 RDN25-1RDN25-1 3396 nt8.21□□□□□ -1.09
CUP9P41817 RDN25-2RDN25-2 3396 nt8.21□□□□□ -1.09
CUP9P41817 PAU19YMR325W 375 nt8.21□□□□□ -1.1
CUP9P41817 PAR32YDL173W 888 nt8.2□□□□□ -1.1
CUP9P41817 POT1YIL160C 1254 nt8.2□□□□□ -1.1
CUP9P41817 GSF2YML048W 1212 nt8.2□□□□□ -1.1
CUP9P41817 RPC82YPR190C 1965 nt8.2□□□□□ -1.1
CUP9P41817 DAK2YFL053W 1776 nt8.19□□□□□ -1.1
CUP9P41817 EAF3YPR023C 1206 nt8.18□□□□□ -1.1
CUP9P41817 IML3YBR107C 738 nt8.18□□□□□ -1.1
CUP9P41817 INA1YLR413W 2028 nt8.17□□□□□ -1.1
CUP9P41817 DLD2YDL178W 1593 nt8.17□□□□□ -1.1
CUP9P41817 YNL024CYNL024C 741 nt8.16□□□□□ -1.1
CUP9P41817 CTI6YPL181W 1521 nt8.16□□□□□ -1.1
CUP9P41817 SPT20YOL148C 1815 nt8.15□□□□□ -1.1
CUP9P41817 TUB4YLR212C 1422 nt8.15□□□□□ -1.1
CUP9P41817 FLR1YBR008C 1647 nt8.14□□□□□ -1.11
CUP9P41817 OSH7YHR001W 1314 nt8.14□□□□□ -1.11
CUP9P41817 TIM44YIL022W 1296 nt8.14□□□□□ -1.11
CUP9P41817 YJL067WYJL067W 351 nt8.14□□□□□ -1.11
CUP9P41817 TMA23YMR269W 636 nt8.13□□□□□ -1.11
CUP9P41817 RSC8YFR037C 1674 nt8.13□□□□□ -1.11
CUP9P41817 YPS3YLR121C 1527 nt8.12□□□□□ -1.11
CUP9P41817 FMS1YMR020W 1527 nt8.1□□□□□ -1.11
CUP9P41817 HSL7YBR133C 2484 nt8.1□□□□□ -1.11
CUP9P41817 SOL2YCR073W-A 948 nt8.08□□□□□ -1.12
CUP9P41817 APS2YJR058C 444 nt8.08□□□□□ -1.12
CUP9P41817 SLG1YOR008C 1137 nt8.08□□□□□ -1.12
CUP9P41817 CWC15YDR163W 528 nt8.07□□□□□ -1.12
CUP9P41817 DDI1YER143W 1287 nt8.07□□□□□ -1.12
CUP9P41817 NIF3YGL221C 867 nt8.07□□□□□ -1.12
CUP9P41817 IMO32YGR031W 1029 nt8.07□□□□□ -1.12
CUP9P41817 SPP2YOR148C 558 nt8.07□□□□□ -1.12
CUP9P41817 TIP1YBR067C 633 nt8.06□□□□□ -1.12
CUP9P41817 HEM13YDR044W 987 nt8.05□□□□□ -1.12
CUP9P41817 LSM5YER146W 282 nt8.05□□□□□ -1.12
CUP9P41817 SPS100YHR139C 981 nt8.03□□□□□ -1.12
CUP9P41817 RRT8YOL048C 1029 nt8.02□□□□□ -1.13
CUP9P41817 VPS62YGR141W 1404 nt8.02□□□□□ -1.13
CUP9P41817 IGD1YFR017C 588 nt8□□□□□ -1.13
CUP9P41817 ASP3-1YLR155C 1089 nt7.99□□□□□ -1.13
CUP9P41817 ASP3-2YLR157C 1089 nt7.99□□□□□ -1.13
CUP9P41817 ASP3-3YLR158C 1089 nt7.99□□□□□ -1.13
CUP9P41817 ASP3-4YLR160C 1089 nt7.99□□□□□ -1.13
CUP9P41817 ACH1YBL015W 1581 nt7.99□□□□□ -1.13
CUP9P41817 RIB1YBL033C 1038 nt7.98□□□□□ -1.13
CUP9P41817 TAT2YOL020W 1779 nt7.97□□□□□ -1.13
CUP9P41817 YDL086WYDL086W 822 nt7.97□□□□□ -1.13
CUP9P41817 ADE8YDR408C 645 nt7.97□□□□□ -1.13
CUP9P41817 YFR036W-AYFR036W-A 651 nt7.97□□□□□ -1.13
CUP9P41817 YDR455CYDR455C 309 nt7.96□□□□□ -1.14
CUP9P41817 ILV3YJR016C 1758 nt7.96□□□□□ -1.14
CUP9P41817 YCP4YCR004C 744 nt7.95□□□□□ -1.14
CUP9P41817 YIA6YIL006W 1122 nt7.95□□□□□ -1.14
Retrieved 100 of 7,029 protein–RNA pairs in 32.3 ms