Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.36■□□□□ 0.85
PCDHGA3Q9Y5H0 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHGA3Q9Y5H0 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.36■□□□□ 0.85
PCDHGA3Q9Y5H0 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHGA3Q9Y5H0 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PCDHGA3Q9Y5H0 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 SLC29A4P1-201ENST00000398760 971 ntBASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 CNN2P6-201ENST00000439038 900 ntBASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 AC133552.2-202ENST00000575694 574 ntBASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 AP004607.7-201ENST00000527152 1677 ntBASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
PCDHGA3Q9Y5H0 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 SLC7A5P1-201ENST00000568957 537 ntBASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 AC010536.3-201ENST00000620306 533 ntBASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
PCDHGA3Q9Y5H0 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCDHGA3Q9Y5H0 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
PCDHGA3Q9Y5H0 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCDHGA3Q9Y5H0 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCDHGA3Q9Y5H0 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PCDHGA3Q9Y5H0 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PCDHGA3Q9Y5H0 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.33■□□□□ 0.85
PCDHGA3Q9Y5H0 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.33■□□□□ 0.85
PCDHGA3Q9Y5H0 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.33■□□□□ 0.85
PCDHGA3Q9Y5H0 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
PCDHGA3Q9Y5H0 OR7E47P-201ENST00000546390 1422 ntBASIC20.33■□□□□ 0.84
PCDHGA3Q9Y5H0 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
PCDHGA3Q9Y5H0 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.33■□□□□ 0.84
PCDHGA3Q9Y5H0 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PCDHGA3Q9Y5H0 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.33■□□□□ 0.84
PCDHGA3Q9Y5H0 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.33■□□□□ 0.84
PCDHGA3Q9Y5H0 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.33■□□□□ 0.84
PCDHGA3Q9Y5H0 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PCDHGA3Q9Y5H0 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 AC242852.2-201ENST00000615738 1807 ntBASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 AC073210.2-201ENST00000430369 194 ntBASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 KRT18P6-201ENST00000555540 1265 ntBASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA3Q9Y5H0 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 AF201337.1-201ENST00000520239 748 ntBASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA3Q9Y5H0 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms