Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
ZC3H4Q9UPT8 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
ZC3H4Q9UPT8 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
ZC3H4Q9UPT8 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC25.67■■□□□ 1.7
ZC3H4Q9UPT8 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC25.67■■□□□ 1.7
ZC3H4Q9UPT8 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC25.66■■□□□ 1.7
ZC3H4Q9UPT8 MIR4785-201ENST00000585005 73 ntBASIC25.66■■□□□ 1.7
ZC3H4Q9UPT8 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC25.66■■□□□ 1.7
ZC3H4Q9UPT8 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
ZC3H4Q9UPT8 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
ZC3H4Q9UPT8 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC25.66■■□□□ 1.7
ZC3H4Q9UPT8 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC25.66■■□□□ 1.7
ZC3H4Q9UPT8 OR7E47P-201ENST00000546390 1422 ntBASIC25.66■■□□□ 1.7
ZC3H4Q9UPT8 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
ZC3H4Q9UPT8 EED-207ENST00000528180 1745 ntTSL 5 BASIC25.65■■□□□ 1.7
ZC3H4Q9UPT8 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
ZC3H4Q9UPT8 TSPY7P-201ENST00000431358 1114 ntBASIC25.65■■□□□ 1.7
ZC3H4Q9UPT8 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC25.65■■□□□ 1.7
ZC3H4Q9UPT8 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
ZC3H4Q9UPT8 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC25.65■■□□□ 1.7
ZC3H4Q9UPT8 AL589743.5-201ENST00000616611 1050 ntBASIC25.65■■□□□ 1.7
ZC3H4Q9UPT8 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
ZC3H4Q9UPT8 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
ZC3H4Q9UPT8 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC25.65■■□□□ 1.7
ZC3H4Q9UPT8 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
ZC3H4Q9UPT8 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
ZC3H4Q9UPT8 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC25.64■■□□□ 1.7
ZC3H4Q9UPT8 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
ZC3H4Q9UPT8 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC25.64■■□□□ 1.7
ZC3H4Q9UPT8 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC25.64■■□□□ 1.7
ZC3H4Q9UPT8 OR2A1-AS1-207ENST00000486094 819 ntBASIC25.64■■□□□ 1.7
ZC3H4Q9UPT8 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
ZC3H4Q9UPT8 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
ZC3H4Q9UPT8 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
ZC3H4Q9UPT8 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC25.64■■□□□ 1.7
ZC3H4Q9UPT8 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
ZC3H4Q9UPT8 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
ZC3H4Q9UPT8 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
ZC3H4Q9UPT8 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC25.64■■□□□ 1.7
ZC3H4Q9UPT8 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
ZC3H4Q9UPT8 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
ZC3H4Q9UPT8 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 ISG20-202ENST00000379224 540 ntTSL 3 BASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 AL049637.2-201ENST00000641778 930 ntBASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 AL355472.2-201ENST00000422958 438 ntBASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 SOX15-203ENST00000570788 1093 ntBASIC25.63■■□□□ 1.69
ZC3H4Q9UPT8 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
ZC3H4Q9UPT8 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
ZC3H4Q9UPT8 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
ZC3H4Q9UPT8 AL139125.2-201ENST00000623134 1869 ntBASIC25.62■■□□□ 1.69
ZC3H4Q9UPT8 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
ZC3H4Q9UPT8 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC25.62■■□□□ 1.69
ZC3H4Q9UPT8 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
ZC3H4Q9UPT8 POM121L13P-201ENST00000422362 380 ntBASIC25.62■■□□□ 1.69
ZC3H4Q9UPT8 REXO2-216ENST00000544196 452 ntTSL 3 BASIC25.62■■□□□ 1.69
ZC3H4Q9UPT8 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
ZC3H4Q9UPT8 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC25.62■■□□□ 1.69
ZC3H4Q9UPT8 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
ZC3H4Q9UPT8 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 AL135905.2-201ENST00000584934 1404 ntBASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 SLC29A4P2-201ENST00000504749 1089 ntBASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 CD177P1-201ENST00000606252 935 ntBASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC25.61■■□□□ 1.69
ZC3H4Q9UPT8 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
ZC3H4Q9UPT8 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
ZC3H4Q9UPT8 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
ZC3H4Q9UPT8 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC25.6■■□□□ 1.69
ZC3H4Q9UPT8 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
ZC3H4Q9UPT8 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC25.6■■□□□ 1.69
ZC3H4Q9UPT8 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
ZC3H4Q9UPT8 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
ZC3H4Q9UPT8 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
ZC3H4Q9UPT8 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
ZC3H4Q9UPT8 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
ZC3H4Q9UPT8 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
ZC3H4Q9UPT8 NT5C-211ENST00000582170 653 ntTSL 3 BASIC25.6■■□□□ 1.69
ZC3H4Q9UPT8 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC25.59■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms