Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC40.19■■■■■ 4.02
SHROOM4Q9ULL8 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC40.19■■■■■ 4.02
SHROOM4Q9ULL8 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC40.19■■■■■ 4.02
SHROOM4Q9ULL8 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC40.19■■■■■ 4.02
SHROOM4Q9ULL8 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC40.19■■■■■ 4.02
SHROOM4Q9ULL8 PEX7-202ENST00000367756 680 ntTSL 3 BASIC40.19■■■■■ 4.02
SHROOM4Q9ULL8 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC40.19■■■■■ 4.02
SHROOM4Q9ULL8 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC40.19■■■■■ 4.02
SHROOM4Q9ULL8 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC40.19■■■■■ 4.02
SHROOM4Q9ULL8 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC40.18■■■■■ 4.02
SHROOM4Q9ULL8 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC40.18■■■■■ 4.02
SHROOM4Q9ULL8 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC40.18■■■■■ 4.02
SHROOM4Q9ULL8 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC40.18■■■■■ 4.02
SHROOM4Q9ULL8 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC40.18■■■■■ 4.02
SHROOM4Q9ULL8 AC010980.2-201ENST00000587099 1412 ntBASIC40.18■■■■■ 4.02
SHROOM4Q9ULL8 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC40.18■■■■■ 4.02
SHROOM4Q9ULL8 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC40.18■■■■■ 4.02
SHROOM4Q9ULL8 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC40.18■■■■■ 4.02
SHROOM4Q9ULL8 GXYLT1P3-201ENST00000453058 1193 ntBASIC40.18■■■■■ 4.02
SHROOM4Q9ULL8 AL034346.1-201ENST00000568244 1277 ntBASIC40.18■■■■■ 4.02
SHROOM4Q9ULL8 LINC01023-201ENST00000606054 436 ntBASIC40.18■■■■■ 4.02
SHROOM4Q9ULL8 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC40.18■■■■■ 4.02
SHROOM4Q9ULL8 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC40.17■■■■■ 4.02
SHROOM4Q9ULL8 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC40.17■■■■■ 4.02
SHROOM4Q9ULL8 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC40.17■■■■■ 4.02
SHROOM4Q9ULL8 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC40.17■■■■■ 4.02
SHROOM4Q9ULL8 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC40.17■■■■■ 4.02
SHROOM4Q9ULL8 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC40.16■■■■■ 4.02
SHROOM4Q9ULL8 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC40.16■■■■■ 4.02
SHROOM4Q9ULL8 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC40.16■■■■■ 4.02
SHROOM4Q9ULL8 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC40.16■■■■■ 4.02
SHROOM4Q9ULL8 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC40.16■■■■■ 4.02
SHROOM4Q9ULL8 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC40.16■■■■■ 4.02
SHROOM4Q9ULL8 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC40.15■■■■■ 4.02
SHROOM4Q9ULL8 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC40.15■■■■■ 4.02
SHROOM4Q9ULL8 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC40.15■■■■■ 4.02
SHROOM4Q9ULL8 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC40.15■■■■■ 4.02
SHROOM4Q9ULL8 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC40.15■■■■■ 4.02
SHROOM4Q9ULL8 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC40.15■■■■■ 4.02
SHROOM4Q9ULL8 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC40.15■■■■■ 4.02
SHROOM4Q9ULL8 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC40.15■■■■■ 4.02
SHROOM4Q9ULL8 AC008403.3-201ENST00000598924 454 ntBASIC40.15■■■■■ 4.02
SHROOM4Q9ULL8 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC40.15■■■■■ 4.02
SHROOM4Q9ULL8 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC40.15■■■■■ 4.02
SHROOM4Q9ULL8 AC080038.3-201ENST00000623346 1952 ntBASIC40.15■■■■■ 4.02
SHROOM4Q9ULL8 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC40.14■■■■■ 4.02
SHROOM4Q9ULL8 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC40.14■■■■■ 4.02
SHROOM4Q9ULL8 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC40.14■■■■■ 4.02
SHROOM4Q9ULL8 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC40.14■■■■■ 4.02
SHROOM4Q9ULL8 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC40.14■■■■■ 4.02
SHROOM4Q9ULL8 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC40.14■■■■■ 4.02
SHROOM4Q9ULL8 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC40.14■■■■■ 4.02
SHROOM4Q9ULL8 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC40.14■■■■■ 4.02
SHROOM4Q9ULL8 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC40.14■■■■■ 4.02
SHROOM4Q9ULL8 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC40.14■■■■■ 4.02
SHROOM4Q9ULL8 RPS20-210ENST00000523936 899 ntTSL 2 BASIC40.13■■■■■ 4.02
SHROOM4Q9ULL8 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC40.13■■■■■ 4.02
SHROOM4Q9ULL8 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC40.13■■■■■ 4.02
SHROOM4Q9ULL8 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC40.13■■■■■ 4.01
SHROOM4Q9ULL8 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC40.13■■■■■ 4.01
SHROOM4Q9ULL8 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC40.13■■■■■ 4.01
SHROOM4Q9ULL8 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC40.13■■■■■ 4.01
SHROOM4Q9ULL8 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC40.13■■■■■ 4.01
SHROOM4Q9ULL8 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC40.13■■■■■ 4.01
SHROOM4Q9ULL8 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC40.13■■■■■ 4.01
SHROOM4Q9ULL8 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC40.12■■■■■ 4.01
SHROOM4Q9ULL8 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC40.12■■■■■ 4.01
SHROOM4Q9ULL8 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC40.12■■■■■ 4.01
SHROOM4Q9ULL8 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC40.12■■■■■ 4.01
SHROOM4Q9ULL8 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC40.12■■■■■ 4.01
SHROOM4Q9ULL8 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC40.12■■■■■ 4.01
SHROOM4Q9ULL8 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC40.12■■■■■ 4.01
SHROOM4Q9ULL8 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC40.12■■■■■ 4.01
SHROOM4Q9ULL8 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC40.12■■■■■ 4.01
SHROOM4Q9ULL8 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC40.12■■■■■ 4.01
SHROOM4Q9ULL8 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC40.12■■■■■ 4.01
SHROOM4Q9ULL8 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC40.12■■■■■ 4.01
SHROOM4Q9ULL8 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC40.12■■■■■ 4.01
SHROOM4Q9ULL8 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC40.11■■■■■ 4.01
SHROOM4Q9ULL8 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC40.11■■■■■ 4.01
SHROOM4Q9ULL8 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC40.11■■■■■ 4.01
SHROOM4Q9ULL8 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC40.11■■■■■ 4.01
SHROOM4Q9ULL8 MAX-217ENST00000557277 728 ntTSL 3 BASIC40.11■■■■■ 4.01
SHROOM4Q9ULL8 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC40.11■■■■■ 4.01
SHROOM4Q9ULL8 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC40.1■■■■■ 4.01
SHROOM4Q9ULL8 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC40.1■■■■■ 4.01
SHROOM4Q9ULL8 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC40.1■■■■■ 4.01
SHROOM4Q9ULL8 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC40.1■■■■■ 4.01
SHROOM4Q9ULL8 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC40.1■■■■■ 4.01
SHROOM4Q9ULL8 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC40.1■■■■■ 4.01
SHROOM4Q9ULL8 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC40.1■■■■■ 4.01
SHROOM4Q9ULL8 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC40.1■■■■■ 4.01
SHROOM4Q9ULL8 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC40.1■■■■■ 4.01
SHROOM4Q9ULL8 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC40.09■■■■■ 4.01
SHROOM4Q9ULL8 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC40.09■■■■■ 4.01
SHROOM4Q9ULL8 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC40.09■■■■■ 4.01
SHROOM4Q9ULL8 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC40.09■■■■■ 4.01
SHROOM4Q9ULL8 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC40.09■■■■■ 4.01
SHROOM4Q9ULL8 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC40.09■■■■■ 4.01
SHROOM4Q9ULL8 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC40.09■■■■■ 4.01
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms