Protein–RNA interactions for Protein: Q9NRR5

UBQLN4, Ubiquilin-4, humanhuman

Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN4Q9NRR5 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN4Q9NRR5 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN4Q9NRR5 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN4Q9NRR5 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.34■□□□□ 0.69
UBQLN4Q9NRR5 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN4Q9NRR5 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN4Q9NRR5 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN4Q9NRR5 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.34■□□□□ 0.69
UBQLN4Q9NRR5 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.34■□□□□ 0.69
UBQLN4Q9NRR5 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN4Q9NRR5 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.34■□□□□ 0.69
UBQLN4Q9NRR5 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.34■□□□□ 0.69
UBQLN4Q9NRR5 AC138907.5-202ENST00000569484 235 ntBASIC19.34■□□□□ 0.69
UBQLN4Q9NRR5 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
UBQLN4Q9NRR5 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
UBQLN4Q9NRR5 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.33■□□□□ 0.69
UBQLN4Q9NRR5 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.33■□□□□ 0.69
UBQLN4Q9NRR5 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
UBQLN4Q9NRR5 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
UBQLN4Q9NRR5 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.33■□□□□ 0.68
UBQLN4Q9NRR5 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.33■□□□□ 0.68
UBQLN4Q9NRR5 AC008175.2-201ENST00000612840 297 ntBASIC19.33■□□□□ 0.68
UBQLN4Q9NRR5 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
UBQLN4Q9NRR5 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.33■□□□□ 0.68
UBQLN4Q9NRR5 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.33■□□□□ 0.68
UBQLN4Q9NRR5 FEM1AP4-201ENST00000443167 1987 ntBASIC19.33■□□□□ 0.68
UBQLN4Q9NRR5 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
UBQLN4Q9NRR5 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
UBQLN4Q9NRR5 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 POU5F1P4-201ENST00000413175 1085 ntBASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 AC034268.1-201ENST00000441047 882 ntBASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 DUX4L2-201ENST00000561772 1275 ntBASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 DUX4L6-201ENST00000626483 1275 ntBASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 DUX4L1-201ENST00000627662 1275 ntBASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 DUX4L8-201ENST00000629013 1275 ntBASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 DUX4L3-201ENST00000630187 1275 ntBASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 DUX4L7-201ENST00000630678 1275 ntBASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 DUX4L5-201ENST00000630834 1275 ntBASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.32■□□□□ 0.68
UBQLN4Q9NRR5 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 AP004607.4-201ENST00000530158 1459 ntBASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 AC104187.1-201ENST00000607510 612 ntBASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
UBQLN4Q9NRR5 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 AL024507.2-201ENST00000606070 2574 ntBASIC19.3■□□□□ 0.68
UBQLN4Q9NRR5 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UBQLN4Q9NRR5 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UBQLN4Q9NRR5 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
UBQLN4Q9NRR5 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
UBQLN4Q9NRR5 AC004854.2-201ENST00000608450 1441 ntBASIC19.29■□□□□ 0.68
UBQLN4Q9NRR5 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UBQLN4Q9NRR5 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms