Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM39Q9HCM9 LINC00565-201ENST00000562710 2331 ntBASIC20.83■□□□□ 0.93
TRIM39Q9HCM9 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
TRIM39Q9HCM9 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM39Q9HCM9 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM39Q9HCM9 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM39Q9HCM9 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM39Q9HCM9 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM39Q9HCM9 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM39Q9HCM9 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
TRIM39Q9HCM9 UBE2DNL-204ENST00000602536 740 ntBASIC20.83■□□□□ 0.93
TRIM39Q9HCM9 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM39Q9HCM9 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM39Q9HCM9 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
TRIM39Q9HCM9 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM39Q9HCM9 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM39Q9HCM9 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
TRIM39Q9HCM9 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM39Q9HCM9 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.92
TRIM39Q9HCM9 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 SLC7A5P1-201ENST00000568957 537 ntBASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 BID-214ENST00000617586 542 ntTSL 5 BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 AC120498.10-201ENST00000621827 505 ntBASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM39Q9HCM9 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 SLC7A5P2-201ENST00000553010 536 ntBASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 MYCNOS-205ENST00000641950 531 ntBASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM39Q9HCM9 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.8■□□□□ 0.92
TRIM39Q9HCM9 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 AC011767.1-201ENST00000617410 1153 ntBASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 AC061975.6-201ENST00000579045 1553 ntBASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM39Q9HCM9 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.78■□□□□ 0.92
TRIM39Q9HCM9 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms