Protein–RNA interactions for Protein: Q9H3Q1

CDC42EP4, Cdc42 effector protein 4, humanhuman

Known RBP Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP4Q9H3Q1 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDC42EP4Q9H3Q1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.4■■□□□ 1.02
CDC42EP4Q9H3Q1 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CDC42EP4Q9H3Q1 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.4■■□□□ 1.02
CDC42EP4Q9H3Q1 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDC42EP4Q9H3Q1 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.4■■□□□ 1.02
CDC42EP4Q9H3Q1 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CDC42EP4Q9H3Q1 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CDC42EP4Q9H3Q1 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.4■■□□□ 1.02
CDC42EP4Q9H3Q1 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
CDC42EP4Q9H3Q1 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CDC42EP4Q9H3Q1 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CDC42EP4Q9H3Q1 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.39■■□□□ 1.02
CDC42EP4Q9H3Q1 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CDC42EP4Q9H3Q1 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CDC42EP4Q9H3Q1 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
CDC42EP4Q9H3Q1 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
CDC42EP4Q9H3Q1 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.39■■□□□ 1.01
CDC42EP4Q9H3Q1 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.39■■□□□ 1.01
CDC42EP4Q9H3Q1 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDC42EP4Q9H3Q1 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CDC42EP4Q9H3Q1 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CDC42EP4Q9H3Q1 AL356740.2-201ENST00000601559 647 ntBASIC21.39■■□□□ 1.01
CDC42EP4Q9H3Q1 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.39■■□□□ 1.01
CDC42EP4Q9H3Q1 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
CDC42EP4Q9H3Q1 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CDC42EP4Q9H3Q1 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
CDC42EP4Q9H3Q1 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDC42EP4Q9H3Q1 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDC42EP4Q9H3Q1 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
CDC42EP4Q9H3Q1 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CDC42EP4Q9H3Q1 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CDC42EP4Q9H3Q1 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.38■■□□□ 1.01
CDC42EP4Q9H3Q1 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.38■■□□□ 1.01
CDC42EP4Q9H3Q1 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDC42EP4Q9H3Q1 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.38■■□□□ 1.01
CDC42EP4Q9H3Q1 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CDC42EP4Q9H3Q1 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CDC42EP4Q9H3Q1 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
CDC42EP4Q9H3Q1 PCDHAC2-203ENST00000615316 3011 ntBASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 SRD5A1P1-201ENST00000442297 786 ntBASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 MIR3621-201ENST00000580529 85 ntBASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 AC092171.4-201ENST00000609130 632 ntBASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 AC027702.1-201ENST00000563810 1770 ntBASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.36■■□□□ 1.01
CDC42EP4Q9H3Q1 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.35■■□□□ 1.01
CDC42EP4Q9H3Q1 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDC42EP4Q9H3Q1 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDC42EP4Q9H3Q1 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDC42EP4Q9H3Q1 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDC42EP4Q9H3Q1 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDC42EP4Q9H3Q1 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CDC42EP4Q9H3Q1 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDC42EP4Q9H3Q1 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.35■■□□□ 1.01
CDC42EP4Q9H3Q1 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDC42EP4Q9H3Q1 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CDC42EP4Q9H3Q1 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDC42EP4Q9H3Q1 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDC42EP4Q9H3Q1 AC007952.6-201ENST00000573168 2673 ntBASIC21.34■■□□□ 1.01
CDC42EP4Q9H3Q1 AC003957.1-201ENST00000625108 2673 ntBASIC21.34■■□□□ 1.01
CDC42EP4Q9H3Q1 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDC42EP4Q9H3Q1 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.34■■□□□ 1.01
CDC42EP4Q9H3Q1 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.34■■□□□ 1.01
CDC42EP4Q9H3Q1 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
CDC42EP4Q9H3Q1 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDC42EP4Q9H3Q1 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDC42EP4Q9H3Q1 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.34■■□□□ 1.01
CDC42EP4Q9H3Q1 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDC42EP4Q9H3Q1 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.34■■□□□ 1.01
CDC42EP4Q9H3Q1 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.34■■□□□ 1.01
CDC42EP4Q9H3Q1 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms