Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
RPAP1Q9BWH6 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
RPAP1Q9BWH6 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
RPAP1Q9BWH6 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.69
RPAP1Q9BWH6 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 METTL15-202ENST00000403099 795 ntTSL 5 BASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 AC010141.2-201ENST00000452426 721 ntBASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 BRI3-207ENST00000539286 699 ntTSL 2 BASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 OAS3-207ENST00000551007 998 ntTSL 2 BASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 AC005181.1-201ENST00000604782 1256 ntBASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 AP006587.3-201ENST00000525742 1516 ntBASIC25.61■■□□□ 1.69
RPAP1Q9BWH6 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 AC007322.1-201ENST00000426983 750 ntBASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 PARP1-210ENST00000629232 477 ntTSL 5 BASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 AC026471.6-201ENST00000622954 1905 ntBASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
RPAP1Q9BWH6 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC25.59■■□□□ 1.69
RPAP1Q9BWH6 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
RPAP1Q9BWH6 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
RPAP1Q9BWH6 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
RPAP1Q9BWH6 SERP1-208ENST00000491660 830 ntTSL 2 BASIC25.59■■□□□ 1.69
RPAP1Q9BWH6 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
RPAP1Q9BWH6 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
RPAP1Q9BWH6 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
RPAP1Q9BWH6 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
RPAP1Q9BWH6 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC25.59■■□□□ 1.69
RPAP1Q9BWH6 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
RPAP1Q9BWH6 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC25.59■■□□□ 1.69
RPAP1Q9BWH6 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
RPAP1Q9BWH6 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC25.59■■□□□ 1.69
RPAP1Q9BWH6 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC25.58■■□□□ 1.69
RPAP1Q9BWH6 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
RPAP1Q9BWH6 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC25.58■■□□□ 1.69
RPAP1Q9BWH6 CNN2P6-201ENST00000439038 900 ntBASIC25.58■■□□□ 1.69
RPAP1Q9BWH6 APTR-205ENST00000447009 902 ntTSL 2 BASIC25.58■■□□□ 1.69
RPAP1Q9BWH6 AC138907.5-202ENST00000569484 235 ntBASIC25.58■■□□□ 1.69
RPAP1Q9BWH6 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
RPAP1Q9BWH6 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
RPAP1Q9BWH6 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
RPAP1Q9BWH6 GOLGA2P6-201ENST00000340929 2049 ntBASIC25.58■■□□□ 1.69
RPAP1Q9BWH6 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC25.58■■□□□ 1.68
RPAP1Q9BWH6 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
RPAP1Q9BWH6 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
RPAP1Q9BWH6 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
RPAP1Q9BWH6 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC25.57■■□□□ 1.68
RPAP1Q9BWH6 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC25.57■■□□□ 1.68
RPAP1Q9BWH6 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC25.57■■□□□ 1.68
RPAP1Q9BWH6 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
RPAP1Q9BWH6 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC25.57■■□□□ 1.68
RPAP1Q9BWH6 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
RPAP1Q9BWH6 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC25.57■■□□□ 1.68
RPAP1Q9BWH6 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC25.56■■□□□ 1.68
RPAP1Q9BWH6 AC083906.2-201ENST00000511578 360 ntBASIC25.56■■□□□ 1.68
RPAP1Q9BWH6 KRT18P20-201ENST00000548986 1279 ntBASIC25.56■■□□□ 1.68
RPAP1Q9BWH6 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
RPAP1Q9BWH6 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC25.56■■□□□ 1.68
RPAP1Q9BWH6 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
RPAP1Q9BWH6 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
RPAP1Q9BWH6 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC25.56■■□□□ 1.68
RPAP1Q9BWH6 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC25.56■■□□□ 1.68
RPAP1Q9BWH6 FXN-202ENST00000396364 980 ntTSL 5 BASIC25.56■■□□□ 1.68
RPAP1Q9BWH6 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC25.56■■□□□ 1.68
RPAP1Q9BWH6 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC25.56■■□□□ 1.68
RPAP1Q9BWH6 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RPAP1Q9BWH6 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC25.55■■□□□ 1.68
RPAP1Q9BWH6 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
RPAP1Q9BWH6 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RPAP1Q9BWH6 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC25.55■■□□□ 1.68
RPAP1Q9BWH6 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RPAP1Q9BWH6 CD99P1-205ENST00000527459 561 ntBASIC25.55■■□□□ 1.68
RPAP1Q9BWH6 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC25.55■■□□□ 1.68
RPAP1Q9BWH6 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
RPAP1Q9BWH6 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RPAP1Q9BWH6 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
RPAP1Q9BWH6 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC25.54■■□□□ 1.68
RPAP1Q9BWH6 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RPAP1Q9BWH6 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RPAP1Q9BWH6 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC25.54■■□□□ 1.68
RPAP1Q9BWH6 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms