Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 AC068587.7-201ENST00000641602 218 ntBASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CSMD1Q96PZ7 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CSMD1Q96PZ7 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CSMD1Q96PZ7 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CSMD1Q96PZ7 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CSMD1Q96PZ7 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CSMD1Q96PZ7 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CSMD1Q96PZ7 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CSMD1Q96PZ7 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CSMD1Q96PZ7 AL355075.4-201ENST00000554988 638 ntBASIC18.03■□□□□ 0.48
CSMD1Q96PZ7 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.03■□□□□ 0.48
CSMD1Q96PZ7 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC18.03■□□□□ 0.48
CSMD1Q96PZ7 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CSMD1Q96PZ7 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.03■□□□□ 0.48
CSMD1Q96PZ7 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CSMD1Q96PZ7 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CSMD1Q96PZ7 AL049637.2-201ENST00000641778 930 ntBASIC18.02■□□□□ 0.48
CSMD1Q96PZ7 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CSMD1Q96PZ7 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CSMD1Q96PZ7 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CSMD1Q96PZ7 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.02■□□□□ 0.48
CSMD1Q96PZ7 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CSMD1Q96PZ7 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CSMD1Q96PZ7 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CSMD1Q96PZ7 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CSMD1Q96PZ7 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.02■□□□□ 0.47
CSMD1Q96PZ7 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CSMD1Q96PZ7 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CSMD1Q96PZ7 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CSMD1Q96PZ7 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 EEF1DP3-203ENST00000566025 782 ntBASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CSMD1Q96PZ7 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CSMD1Q96PZ7 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18■□□□□ 0.47
CSMD1Q96PZ7 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CSMD1Q96PZ7 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18■□□□□ 0.47
CSMD1Q96PZ7 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CSMD1Q96PZ7 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18■□□□□ 0.47
CSMD1Q96PZ7 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18■□□□□ 0.47
CSMD1Q96PZ7 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18■□□□□ 0.47
CSMD1Q96PZ7 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CSMD1Q96PZ7 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CSMD1Q96PZ7 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CSMD1Q96PZ7 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18■□□□□ 0.47
CSMD1Q96PZ7 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CSMD1Q96PZ7 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18■□□□□ 0.47
CSMD1Q96PZ7 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18■□□□□ 0.47
CSMD1Q96PZ7 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CSMD1Q96PZ7 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18■□□□□ 0.47
CSMD1Q96PZ7 SOX15-203ENST00000570788 1093 ntBASIC18■□□□□ 0.47
CSMD1Q96PZ7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18■□□□□ 0.47
CSMD1Q96PZ7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18■□□□□ 0.47
CSMD1Q96PZ7 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18■□□□□ 0.47
CSMD1Q96PZ7 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CSMD1Q96PZ7 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 PNMA6B-201ENST00000538162 1200 ntBASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 HLA-B-256ENST00000639848 1089 ntBASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CSMD1Q96PZ7 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CSMD1Q96PZ7 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms