Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
PTCHD1Q96NR3 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
PTCHD1Q96NR3 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PTCHD1Q96NR3 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
PTCHD1Q96NR3 CLDN5-201ENST00000403084 2357 ntBASIC19.83■□□□□ 0.76
PTCHD1Q96NR3 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD1Q96NR3 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD1Q96NR3 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD1Q96NR3 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD1Q96NR3 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.82■□□□□ 0.76
PTCHD1Q96NR3 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD1Q96NR3 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD1Q96NR3 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD1Q96NR3 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD1Q96NR3 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PTCHD1Q96NR3 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.82■□□□□ 0.76
PTCHD1Q96NR3 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PTCHD1Q96NR3 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 KRT18P20-201ENST00000548986 1279 ntBASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 UBE2DNL-204ENST00000602536 740 ntBASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PTCHD1Q96NR3 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 AC120498.10-201ENST00000621827 505 ntBASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.79■□□□□ 0.76
PTCHD1Q96NR3 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD1Q96NR3 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD1Q96NR3 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD1Q96NR3 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD1Q96NR3 POU5F1P4-201ENST00000413175 1085 ntBASIC19.78■□□□□ 0.76
PTCHD1Q96NR3 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.78■□□□□ 0.76
PTCHD1Q96NR3 SLC7A5P2-201ENST00000553010 536 ntBASIC19.78■□□□□ 0.76
PTCHD1Q96NR3 BID-214ENST00000617586 542 ntTSL 5 BASIC19.78■□□□□ 0.76
PTCHD1Q96NR3 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD1Q96NR3 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD1Q96NR3 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD1Q96NR3 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD1Q96NR3 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.78■□□□□ 0.76
PTCHD1Q96NR3 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
PTCHD1Q96NR3 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
PTCHD1Q96NR3 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms