Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 MIR663A-201ENST00000385250 93 ntBASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 CROCCP5-201ENST00000436658 830 ntBASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.18■□□□□ 0.82
CLIP3Q96DZ5 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 AC080038.3-201ENST00000623346 1952 ntBASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 KRT18P20-201ENST00000548986 1279 ntBASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 AC053503.5-201ENST00000601508 636 ntBASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 AC231657.2-201ENST00000624556 255 ntBASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLIP3Q96DZ5 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 AC007322.1-201ENST00000426983 750 ntBASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 EEF1DP3-203ENST00000566025 782 ntBASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLIP3Q96DZ5 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLIP3Q96DZ5 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLIP3Q96DZ5 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
CLIP3Q96DZ5 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLIP3Q96DZ5 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.15■□□□□ 0.82
CLIP3Q96DZ5 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.15■□□□□ 0.82
CLIP3Q96DZ5 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLIP3Q96DZ5 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLIP3Q96DZ5 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.15■□□□□ 0.82
CLIP3Q96DZ5 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLIP3Q96DZ5 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.15■□□□□ 0.82
CLIP3Q96DZ5 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLIP3Q96DZ5 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.15■□□□□ 0.82
CLIP3Q96DZ5 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLIP3Q96DZ5 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
CLIP3Q96DZ5 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLIP3Q96DZ5 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms