Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 LINC01521-201ENST00000504184 1943 ntBASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
ATG4AQ8WYN0 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ATG4AQ8WYN0 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
ATG4AQ8WYN0 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ATG4AQ8WYN0 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.77■■□□□ 1.08
ATG4AQ8WYN0 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ATG4AQ8WYN0 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
ATG4AQ8WYN0 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ATG4AQ8WYN0 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ATG4AQ8WYN0 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ATG4AQ8WYN0 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.77■■□□□ 1.08
ATG4AQ8WYN0 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
ATG4AQ8WYN0 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
ATG4AQ8WYN0 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 FEM1AP1-201ENST00000431297 1995 ntBASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 AC092667.1-201ENST00000434301 2586 ntBASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ATG4AQ8WYN0 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 AC099791.1-201ENST00000416440 715 ntBASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 PLK5-205ENST00000642079 1969 ntBASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ATG4AQ8WYN0 AC055733.4-201ENST00000638462 1354 ntBASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 AC096631.2-201ENST00000436136 790 ntBASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ATG4AQ8WYN0 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
ATG4AQ8WYN0 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.73■■□□□ 1.07
ATG4AQ8WYN0 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.73■■□□□ 1.07
ATG4AQ8WYN0 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
ATG4AQ8WYN0 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
ATG4AQ8WYN0 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.73■■□□□ 1.07
ATG4AQ8WYN0 TSPY26P-201ENST00000476365 1326 ntBASIC21.73■■□□□ 1.07
ATG4AQ8WYN0 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ATG4AQ8WYN0 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ATG4AQ8WYN0 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ATG4AQ8WYN0 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ATG4AQ8WYN0 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
ATG4AQ8WYN0 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
ATG4AQ8WYN0 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
ATG4AQ8WYN0 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ATG4AQ8WYN0 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
ATG4AQ8WYN0 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
ATG4AQ8WYN0 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ATG4AQ8WYN0 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.72■■□□□ 1.07
ATG4AQ8WYN0 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ATG4AQ8WYN0 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms