Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC27.91■■■□□ 2.06
USHBP1Q8N6Y0 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
USHBP1Q8N6Y0 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC27.89■■■□□ 2.06
USHBP1Q8N6Y0 KRT17P1-201ENST00000399211 1546 ntBASIC27.89■■■□□ 2.06
USHBP1Q8N6Y0 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
USHBP1Q8N6Y0 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
USHBP1Q8N6Y0 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC27.89■■■□□ 2.06
USHBP1Q8N6Y0 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
USHBP1Q8N6Y0 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC27.89■■■□□ 2.06
USHBP1Q8N6Y0 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC27.89■■■□□ 2.06
USHBP1Q8N6Y0 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC27.89■■■□□ 2.06
USHBP1Q8N6Y0 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC27.89■■■□□ 2.06
USHBP1Q8N6Y0 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC27.89■■■□□ 2.06
USHBP1Q8N6Y0 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC27.89■■■□□ 2.06
USHBP1Q8N6Y0 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
USHBP1Q8N6Y0 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
USHBP1Q8N6Y0 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC27.88■■■□□ 2.05
USHBP1Q8N6Y0 C11orf96-202ENST00000528572 1834 ntBASIC27.88■■■□□ 2.05
USHBP1Q8N6Y0 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC27.88■■■□□ 2.05
USHBP1Q8N6Y0 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
USHBP1Q8N6Y0 ADM-205ENST00000528544 586 ntTSL 2 BASIC27.88■■■□□ 2.05
USHBP1Q8N6Y0 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC27.88■■■□□ 2.05
USHBP1Q8N6Y0 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC27.88■■■□□ 2.05
USHBP1Q8N6Y0 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 GAS7-202ENST00000396115 929 ntTSL 5 BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 ME2-208ENST00000638937 2471 ntTSL 5 BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
USHBP1Q8N6Y0 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC27.86■■■□□ 2.05
USHBP1Q8N6Y0 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC27.86■■■□□ 2.05
USHBP1Q8N6Y0 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
USHBP1Q8N6Y0 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC27.86■■■□□ 2.05
USHBP1Q8N6Y0 AC091799.1-201ENST00000422823 811 ntBASIC27.86■■■□□ 2.05
USHBP1Q8N6Y0 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC27.86■■■□□ 2.05
USHBP1Q8N6Y0 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC27.86■■■□□ 2.05
USHBP1Q8N6Y0 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC27.86■■■□□ 2.05
USHBP1Q8N6Y0 INO80E-214ENST00000620599 515 ntTSL 2 BASIC27.86■■■□□ 2.05
USHBP1Q8N6Y0 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC27.86■■■□□ 2.05
USHBP1Q8N6Y0 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC27.86■■■□□ 2.05
USHBP1Q8N6Y0 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
USHBP1Q8N6Y0 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC27.85■■■□□ 2.05
USHBP1Q8N6Y0 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
USHBP1Q8N6Y0 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC27.85■■■□□ 2.05
USHBP1Q8N6Y0 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
USHBP1Q8N6Y0 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC27.85■■■□□ 2.05
USHBP1Q8N6Y0 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC27.85■■■□□ 2.05
USHBP1Q8N6Y0 PBX1-209ENST00000485769 834 ntTSL 2 BASIC27.85■■■□□ 2.05
USHBP1Q8N6Y0 CD44-222ENST00000526025 1052 ntTSL 2 BASIC27.85■■■□□ 2.05
USHBP1Q8N6Y0 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
USHBP1Q8N6Y0 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC27.85■■■□□ 2.05
USHBP1Q8N6Y0 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
USHBP1Q8N6Y0 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
USHBP1Q8N6Y0 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
USHBP1Q8N6Y0 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
USHBP1Q8N6Y0 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC27.84■■■□□ 2.05
USHBP1Q8N6Y0 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC27.84■■■□□ 2.05
USHBP1Q8N6Y0 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC27.84■■■□□ 2.05
USHBP1Q8N6Y0 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC27.84■■■□□ 2.05
USHBP1Q8N6Y0 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC27.84■■■□□ 2.05
USHBP1Q8N6Y0 AC006058.3-201ENST00000606217 1069 ntBASIC27.84■■■□□ 2.05
USHBP1Q8N6Y0 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC27.84■■■□□ 2.05
USHBP1Q8N6Y0 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC27.84■■■□□ 2.05
USHBP1Q8N6Y0 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
USHBP1Q8N6Y0 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC27.83■■■□□ 2.05
USHBP1Q8N6Y0 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC27.83■■■□□ 2.05
USHBP1Q8N6Y0 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC27.83■■■□□ 2.05
USHBP1Q8N6Y0 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC27.83■■■□□ 2.05
USHBP1Q8N6Y0 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
USHBP1Q8N6Y0 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
USHBP1Q8N6Y0 MMAB-206ENST00000540016 945 ntTSL 3 BASIC27.83■■■□□ 2.05
USHBP1Q8N6Y0 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.05
USHBP1Q8N6Y0 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
USHBP1Q8N6Y0 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms