Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
USP43Q70EL4 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.04■□□□□ 0.64
USP43Q70EL4 AC004448.1-201ENST00000458332 883 ntBASIC19.04■□□□□ 0.64
USP43Q70EL4 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
USP43Q70EL4 AC104564.3-201ENST00000582367 638 ntBASIC19.04■□□□□ 0.64
USP43Q70EL4 AC005837.3-201ENST00000612163 286 ntBASIC19.04■□□□□ 0.64
USP43Q70EL4 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP43Q70EL4 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.04■□□□□ 0.64
USP43Q70EL4 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
USP43Q70EL4 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.04■□□□□ 0.64
USP43Q70EL4 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.04■□□□□ 0.64
USP43Q70EL4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP43Q70EL4 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP43Q70EL4 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP43Q70EL4 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
USP43Q70EL4 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP43Q70EL4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP43Q70EL4 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.03■□□□□ 0.64
USP43Q70EL4 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP43Q70EL4 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.03■□□□□ 0.64
USP43Q70EL4 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
USP43Q70EL4 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP43Q70EL4 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP43Q70EL4 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.03■□□□□ 0.64
USP43Q70EL4 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP43Q70EL4 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP43Q70EL4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP43Q70EL4 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.03■□□□□ 0.64
USP43Q70EL4 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
USP43Q70EL4 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP43Q70EL4 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.03■□□□□ 0.64
USP43Q70EL4 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP43Q70EL4 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP43Q70EL4 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.03■□□□□ 0.64
USP43Q70EL4 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP43Q70EL4 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP43Q70EL4 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP43Q70EL4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.02■□□□□ 0.64
USP43Q70EL4 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP43Q70EL4 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.02■□□□□ 0.64
USP43Q70EL4 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP43Q70EL4 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.02■□□□□ 0.64
USP43Q70EL4 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.02■□□□□ 0.64
USP43Q70EL4 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP43Q70EL4 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
USP43Q70EL4 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
USP43Q70EL4 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP43Q70EL4 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.02■□□□□ 0.63
USP43Q70EL4 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
USP43Q70EL4 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.02■□□□□ 0.63
USP43Q70EL4 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP43Q70EL4 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP43Q70EL4 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP43Q70EL4 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP43Q70EL4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
USP43Q70EL4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP43Q70EL4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP43Q70EL4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP43Q70EL4 AC096631.2-201ENST00000436136 790 ntBASIC19.01■□□□□ 0.63
USP43Q70EL4 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.01■□□□□ 0.63
USP43Q70EL4 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.01■□□□□ 0.63
USP43Q70EL4 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.01■□□□□ 0.63
USP43Q70EL4 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP43Q70EL4 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP43Q70EL4 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP43Q70EL4 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP43Q70EL4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP43Q70EL4 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP43Q70EL4 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP43Q70EL4 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.01■□□□□ 0.63
USP43Q70EL4 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
USP43Q70EL4 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.01■□□□□ 0.63
USP43Q70EL4 AP005212.1-201ENST00000581547 1997 ntBASIC19.01■□□□□ 0.63
USP43Q70EL4 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
USP43Q70EL4 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19■□□□□ 0.63
USP43Q70EL4 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
USP43Q70EL4 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
USP43Q70EL4 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP43Q70EL4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP43Q70EL4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19■□□□□ 0.63
USP43Q70EL4 AK3-203ENST00000447596 705 ntTSL 2 BASIC19■□□□□ 0.63
USP43Q70EL4 FP325331.1-202ENST00000623531 1380 ntBASIC19■□□□□ 0.63
USP43Q70EL4 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
USP43Q70EL4 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP43Q70EL4 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19■□□□□ 0.63
USP43Q70EL4 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP43Q70EL4 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP43Q70EL4 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
USP43Q70EL4 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19■□□□□ 0.63
USP43Q70EL4 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP43Q70EL4 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19■□□□□ 0.63
USP43Q70EL4 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP43Q70EL4 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.99■□□□□ 0.63
USP43Q70EL4 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP43Q70EL4 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP43Q70EL4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP43Q70EL4 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.99■□□□□ 0.63
USP43Q70EL4 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP43Q70EL4 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
USP43Q70EL4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms