Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
CHD9Q3L8U1 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC22.58■■□□□ 1.2
CHD9Q3L8U1 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
CHD9Q3L8U1 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
CHD9Q3L8U1 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
CHD9Q3L8U1 TSPY15P-201ENST00000457163 923 ntBASIC22.58■■□□□ 1.2
CHD9Q3L8U1 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC22.58■■□□□ 1.2
CHD9Q3L8U1 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC22.58■■□□□ 1.2
CHD9Q3L8U1 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC22.58■■□□□ 1.2
CHD9Q3L8U1 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC22.58■■□□□ 1.2
CHD9Q3L8U1 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CHD9Q3L8U1 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC22.57■■□□□ 1.2
CHD9Q3L8U1 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CHD9Q3L8U1 RN7SL850P-201ENST00000579959 291 ntBASIC22.57■■□□□ 1.2
CHD9Q3L8U1 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC22.57■■□□□ 1.2
CHD9Q3L8U1 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CHD9Q3L8U1 RARG-204ENST00000543726 1779 ntTSL 2 BASIC22.57■■□□□ 1.2
CHD9Q3L8U1 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CHD9Q3L8U1 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC22.56■■□□□ 1.2
CHD9Q3L8U1 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC22.56■■□□□ 1.2
CHD9Q3L8U1 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
CHD9Q3L8U1 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
CHD9Q3L8U1 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CHD9Q3L8U1 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CHD9Q3L8U1 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CHD9Q3L8U1 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC22.56■■□□□ 1.2
CHD9Q3L8U1 PREB-202ENST00000406567 1910 ntTSL 5 BASIC22.56■■□□□ 1.2
CHD9Q3L8U1 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
CHD9Q3L8U1 AC061975.6-201ENST00000579045 1553 ntBASIC22.56■■□□□ 1.2
CHD9Q3L8U1 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CHD9Q3L8U1 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CHD9Q3L8U1 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
CHD9Q3L8U1 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CHD9Q3L8U1 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHD9Q3L8U1 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC22.55■■□□□ 1.2
CHD9Q3L8U1 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHD9Q3L8U1 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHD9Q3L8U1 AL034346.1-201ENST00000568244 1277 ntBASIC22.55■■□□□ 1.2
CHD9Q3L8U1 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CHD9Q3L8U1 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
CHD9Q3L8U1 AC092068.2-201ENST00000590491 1708 ntBASIC22.55■■□□□ 1.2
CHD9Q3L8U1 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CHD9Q3L8U1 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC22.55■■□□□ 1.2
CHD9Q3L8U1 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHD9Q3L8U1 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHD9Q3L8U1 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC22.55■■□□□ 1.2
CHD9Q3L8U1 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC22.55■■□□□ 1.2
CHD9Q3L8U1 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
CHD9Q3L8U1 ANOS2P-203ENST00000472227 1816 ntBASIC22.55■■□□□ 1.2
CHD9Q3L8U1 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CHD9Q3L8U1 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
CHD9Q3L8U1 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC22.54■■□□□ 1.2
CHD9Q3L8U1 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC22.54■■□□□ 1.2
CHD9Q3L8U1 AL049637.2-201ENST00000641778 930 ntBASIC22.54■■□□□ 1.2
CHD9Q3L8U1 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CHD9Q3L8U1 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC22.54■■□□□ 1.2
CHD9Q3L8U1 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC22.54■■□□□ 1.2
CHD9Q3L8U1 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC22.54■■□□□ 1.2
CHD9Q3L8U1 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC22.54■■□□□ 1.2
CHD9Q3L8U1 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CHD9Q3L8U1 LSM12P1-201ENST00000411836 588 ntBASIC22.54■■□□□ 1.2
CHD9Q3L8U1 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC22.54■■□□□ 1.2
CHD9Q3L8U1 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CHD9Q3L8U1 C2orf69P4-201ENST00000565394 541 ntBASIC22.54■■□□□ 1.2
CHD9Q3L8U1 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CHD9Q3L8U1 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CHD9Q3L8U1 TSPY7P-201ENST00000431358 1114 ntBASIC22.53■■□□□ 1.2
CHD9Q3L8U1 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC22.53■■□□□ 1.2
CHD9Q3L8U1 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC22.53■■□□□ 1.2
CHD9Q3L8U1 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC22.53■■□□□ 1.2
CHD9Q3L8U1 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CHD9Q3L8U1 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
CHD9Q3L8U1 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CHD9Q3L8U1 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
CHD9Q3L8U1 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CHD9Q3L8U1 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CHD9Q3L8U1 TK2-213ENST00000563369 882 ntTSL 5 BASIC22.52■■□□□ 1.2
CHD9Q3L8U1 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
CHD9Q3L8U1 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC22.52■■□□□ 1.2
CHD9Q3L8U1 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CHD9Q3L8U1 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC22.52■■□□□ 1.2
CHD9Q3L8U1 AC100791.3-201ENST00000617619 330 ntBASIC22.52■■□□□ 1.2
CHD9Q3L8U1 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CHD9Q3L8U1 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CHD9Q3L8U1 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CHD9Q3L8U1 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CHD9Q3L8U1 AC092368.3-202ENST00000574180 1591 ntBASIC22.52■■□□□ 1.2
CHD9Q3L8U1 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC22.52■■□□□ 1.2
CHD9Q3L8U1 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
CHD9Q3L8U1 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
CHD9Q3L8U1 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.51■■□□□ 1.19
CHD9Q3L8U1 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CHD9Q3L8U1 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CHD9Q3L8U1 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC22.51■■□□□ 1.19
CHD9Q3L8U1 WDR88-203ENST00000592765 651 ntTSL 5 BASIC22.51■■□□□ 1.19
CHD9Q3L8U1 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
CHD9Q3L8U1 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CHD9Q3L8U1 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CHD9Q3L8U1 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC22.51■■□□□ 1.19
CHD9Q3L8U1 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms