Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN6P56747 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.25■□□□□ 0.83
CLDN6P56747 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.25■□□□□ 0.83
CLDN6P56747 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN6P56747 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN6P56747 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN6P56747 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.25■□□□□ 0.83
CLDN6P56747 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CLDN6P56747 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CLDN6P56747 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CLDN6P56747 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN6P56747 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
CLDN6P56747 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.24■□□□□ 0.83
CLDN6P56747 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.24■□□□□ 0.83
CLDN6P56747 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.24■□□□□ 0.83
CLDN6P56747 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.24■□□□□ 0.83
CLDN6P56747 AC008550.1-201ENST00000511500 884 ntBASIC20.24■□□□□ 0.83
CLDN6P56747 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.24■□□□□ 0.83
CLDN6P56747 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN6P56747 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLDN6P56747 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.23■□□□□ 0.83
CLDN6P56747 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN6P56747 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CLDN6P56747 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN6P56747 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CLDN6P56747 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN6P56747 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN6P56747 LSM12P1-201ENST00000411836 588 ntBASIC20.23■□□□□ 0.83
CLDN6P56747 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.23■□□□□ 0.83
CLDN6P56747 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.23■□□□□ 0.83
CLDN6P56747 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.23■□□□□ 0.83
CLDN6P56747 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.23■□□□□ 0.83
CLDN6P56747 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.23■□□□□ 0.83
CLDN6P56747 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.23■□□□□ 0.83
CLDN6P56747 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CLDN6P56747 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN6P56747 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.23■□□□□ 0.83
CLDN6P56747 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN6P56747 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLDN6P56747 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CLDN6P56747 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.23■□□□□ 0.83
CLDN6P56747 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.23■□□□□ 0.83
CLDN6P56747 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.23■□□□□ 0.83
CLDN6P56747 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.22■□□□□ 0.83
CLDN6P56747 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.22■□□□□ 0.83
CLDN6P56747 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.22■□□□□ 0.83
CLDN6P56747 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN6P56747 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN6P56747 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN6P56747 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN6P56747 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
CLDN6P56747 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN6P56747 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CLDN6P56747 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN6P56747 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.22■□□□□ 0.83
CLDN6P56747 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN6P56747 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.22■□□□□ 0.83
CLDN6P56747 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.22■□□□□ 0.83
CLDN6P56747 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.22■□□□□ 0.83
CLDN6P56747 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN6P56747 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.22■□□□□ 0.83
CLDN6P56747 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
CLDN6P56747 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CLDN6P56747 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLDN6P56747 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.21■□□□□ 0.83
CLDN6P56747 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN6P56747 POU5F1P4-201ENST00000413175 1085 ntBASIC20.21■□□□□ 0.83
CLDN6P56747 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN6P56747 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.21■□□□□ 0.83
CLDN6P56747 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.21■□□□□ 0.83
CLDN6P56747 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CLDN6P56747 AL359736.2-201ENST00000621992 437 ntBASIC20.21■□□□□ 0.83
CLDN6P56747 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN6P56747 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.21■□□□□ 0.83
CLDN6P56747 AC137767.1-201ENST00000602918 1920 ntBASIC20.21■□□□□ 0.83
CLDN6P56747 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.21■□□□□ 0.83
CLDN6P56747 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN6P56747 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CLDN6P56747 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLDN6P56747 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.21■□□□□ 0.83
CLDN6P56747 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN6P56747 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN6P56747 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CLDN6P56747 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN6P56747 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN6P56747 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN6P56747 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN6P56747 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN6P56747 AC008403.3-201ENST00000598924 454 ntBASIC20.2■□□□□ 0.82
CLDN6P56747 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.2■□□□□ 0.82
CLDN6P56747 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN6P56747 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.2■□□□□ 0.82
CLDN6P56747 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN6P56747 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN6P56747 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLDN6P56747 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.19■□□□□ 0.82
CLDN6P56747 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.19■□□□□ 0.82
CLDN6P56747 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLDN6P56747 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.19■□□□□ 0.82
CLDN6P56747 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms