Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA1P55317 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.36■□□□□ 0.85
FOXA1P55317 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA1P55317 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA1P55317 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA1P55317 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA1P55317 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.36■□□□□ 0.85
FOXA1P55317 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA1P55317 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.36■□□□□ 0.85
FOXA1P55317 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.36■□□□□ 0.85
FOXA1P55317 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA1P55317 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA1P55317 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
FOXA1P55317 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.36■□□□□ 0.85
FOXA1P55317 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.35■□□□□ 0.85
FOXA1P55317 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXA1P55317 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXA1P55317 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXA1P55317 TSPY26P-201ENST00000476365 1326 ntBASIC20.35■□□□□ 0.85
FOXA1P55317 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXA1P55317 AC092667.1-201ENST00000434301 2586 ntBASIC20.35■□□□□ 0.85
FOXA1P55317 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
FOXA1P55317 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.35■□□□□ 0.85
FOXA1P55317 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.35■□□□□ 0.85
FOXA1P55317 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.35■□□□□ 0.85
FOXA1P55317 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXA1P55317 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.35■□□□□ 0.85
FOXA1P55317 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
FOXA1P55317 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXA1P55317 AC009237.3-201ENST00000393279 1427 ntBASIC20.35■□□□□ 0.85
FOXA1P55317 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA1P55317 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
FOXA1P55317 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
FOXA1P55317 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA1P55317 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.34■□□□□ 0.85
FOXA1P55317 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA1P55317 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA1P55317 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
FOXA1P55317 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA1P55317 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA1P55317 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.34■□□□□ 0.85
FOXA1P55317 PBX2P1-201ENST00000493219 1291 ntBASIC20.34■□□□□ 0.85
FOXA1P55317 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.34■□□□□ 0.85
FOXA1P55317 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.34■□□□□ 0.85
FOXA1P55317 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.34■□□□□ 0.85
FOXA1P55317 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.34■□□□□ 0.85
FOXA1P55317 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.34■□□□□ 0.85
FOXA1P55317 AC105233.4-201ENST00000642045 216 ntBASIC20.34■□□□□ 0.85
FOXA1P55317 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA1P55317 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA1P55317 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.34■□□□□ 0.85
FOXA1P55317 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA1P55317 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA1P55317 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA1P55317 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.34■□□□□ 0.85
FOXA1P55317 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
FOXA1P55317 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA1P55317 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA1P55317 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
FOXA1P55317 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
FOXA1P55317 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA1P55317 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.33■□□□□ 0.85
FOXA1P55317 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA1P55317 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA1P55317 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA1P55317 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.33■□□□□ 0.85
FOXA1P55317 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
FOXA1P55317 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA1P55317 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXA1P55317 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.33■□□□□ 0.85
FOXA1P55317 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.33■□□□□ 0.85
FOXA1P55317 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.33■□□□□ 0.85
FOXA1P55317 AP001330.3-201ENST00000520123 633 ntBASIC20.33■□□□□ 0.85
FOXA1P55317 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.85
FOXA1P55317 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.33■□□□□ 0.85
FOXA1P55317 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.33■□□□□ 0.85
FOXA1P55317 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
FOXA1P55317 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
FOXA1P55317 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
FOXA1P55317 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
FOXA1P55317 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
FOXA1P55317 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.33■□□□□ 0.84
FOXA1P55317 AC008406.3-201ENST00000620001 1374 ntBASIC20.33■□□□□ 0.84
FOXA1P55317 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
FOXA1P55317 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
FOXA1P55317 AC005224.4-201ENST00000583262 1652 ntBASIC20.32■□□□□ 0.84
FOXA1P55317 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.32■□□□□ 0.84
FOXA1P55317 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
FOXA1P55317 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
FOXA1P55317 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
FOXA1P55317 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.32■□□□□ 0.84
FOXA1P55317 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
FOXA1P55317 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
FOXA1P55317 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.32■□□□□ 0.84
FOXA1P55317 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.32■□□□□ 0.84
FOXA1P55317 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.32■□□□□ 0.84
FOXA1P55317 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
FOXA1P55317 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.32■□□□□ 0.84
FOXA1P55317 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
FOXA1P55317 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms