Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
TNFRSF4P43489 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TNFRSF4P43489 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.26■□□□□ 0.99
TNFRSF4P43489 AC080038.3-201ENST00000623346 1952 ntBASIC21.26■□□□□ 0.99
TNFRSF4P43489 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.26■□□□□ 0.99
TNFRSF4P43489 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.26■□□□□ 0.99
TNFRSF4P43489 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TNFRSF4P43489 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.26■□□□□ 0.99
TNFRSF4P43489 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TNFRSF4P43489 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.25■□□□□ 0.99
TNFRSF4P43489 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TNFRSF4P43489 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
TNFRSF4P43489 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
TNFRSF4P43489 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.25■□□□□ 0.99
TNFRSF4P43489 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
TNFRSF4P43489 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
TNFRSF4P43489 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.25■□□□□ 0.99
TNFRSF4P43489 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TNFRSF4P43489 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.25■□□□□ 0.99
TNFRSF4P43489 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TNFRSF4P43489 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
TNFRSF4P43489 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TNFRSF4P43489 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.25■□□□□ 0.99
TNFRSF4P43489 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TNFRSF4P43489 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
TNFRSF4P43489 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
TNFRSF4P43489 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TNFRSF4P43489 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TNFRSF4P43489 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TNFRSF4P43489 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TNFRSF4P43489 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
TNFRSF4P43489 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
TNFRSF4P43489 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TNFRSF4P43489 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.24■□□□□ 0.99
TNFRSF4P43489 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TNFRSF4P43489 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TNFRSF4P43489 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
TNFRSF4P43489 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TNFRSF4P43489 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TNFRSF4P43489 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TNFRSF4P43489 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.23■□□□□ 0.99
TNFRSF4P43489 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.23■□□□□ 0.99
TNFRSF4P43489 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.23■□□□□ 0.99
TNFRSF4P43489 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.23■□□□□ 0.99
TNFRSF4P43489 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TNFRSF4P43489 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
TNFRSF4P43489 AC026471.6-201ENST00000622954 1905 ntBASIC21.23■□□□□ 0.99
TNFRSF4P43489 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TNFRSF4P43489 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TNFRSF4P43489 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TNFRSF4P43489 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
TNFRSF4P43489 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TNFRSF4P43489 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TNFRSF4P43489 PRORSD1P-201ENST00000295112 541 ntBASIC21.22■□□□□ 0.99
TNFRSF4P43489 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 ESRRAP1-201ENST00000400596 1257 ntBASIC21.22■□□□□ 0.99
TNFRSF4P43489 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TNFRSF4P43489 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TNFRSF4P43489 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
TNFRSF4P43489 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.21■□□□□ 0.99
TNFRSF4P43489 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
TNFRSF4P43489 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TNFRSF4P43489 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.21■□□□□ 0.99
TNFRSF4P43489 C1orf229-201ENST00000623686 2258 ntBASIC21.21■□□□□ 0.99
TNFRSF4P43489 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
TNFRSF4P43489 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.21■□□□□ 0.99
TNFRSF4P43489 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.21■□□□□ 0.99
TNFRSF4P43489 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.21■□□□□ 0.99
TNFRSF4P43489 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.21■□□□□ 0.99
TNFRSF4P43489 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.21■□□□□ 0.99
TNFRSF4P43489 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TNFRSF4P43489 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
TNFRSF4P43489 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.2■□□□□ 0.98
TNFRSF4P43489 AC010542.4-201ENST00000563151 1910 ntBASIC21.2■□□□□ 0.98
TNFRSF4P43489 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF4P43489 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
TNFRSF4P43489 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF4P43489 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.2■□□□□ 0.98
TNFRSF4P43489 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.2■□□□□ 0.98
TNFRSF4P43489 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
TNFRSF4P43489 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.2■□□□□ 0.98
TNFRSF4P43489 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.2■□□□□ 0.98
TNFRSF4P43489 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.2■□□□□ 0.98
TNFRSF4P43489 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF4P43489 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TNFRSF4P43489 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
TNFRSF4P43489 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms